Alumni

 Postdoctoral Alumni
Kyung Mo Kim
  
Duration : 2007.01 ~ 2008.03
Current Position : Researcher in Korea Research Institute of Bioscience & Biotechnology
Publications(2007-2008)
1  Kyung Mo Kim, Samsun Sung, Gustavo Caetano-Anolls, Jae Yong Han, Heebal Kim. An Approach of Orthology Detection from Homologous Sequences under Minimum Evolution. 2008. Nucleic Acid Research 36:17:e110
2  Dong Hwan Lee, Hye Sook Jeong, Kyung Mo Kim, Heebal Kim, and Sang Ho Choi. A consensus sequence for binding of SmcR, a vibrio vulnificus LuxR homologue and genome-wide identification of the SmcR regulon. 2008.Journal of Biological Chemistry 283:35:23610-23618

JeongSoo Lee
  
Duration : 2009.3 ~ 2009.12
Current Position : Researcher in National Instrumentation Center for Environmental Management(NICEM)
Publications(2009)
NONE

Sojeong Ka
  

Duration : 2014.7 ~ 2016.4
Current Position :

Publication
1  Minseok Seo, Kelsey Caetano-Anolles, Sandra Rodriguez-Zas, Sojeong Ka, Jin Young Jeong, Sungkwon Park, Min Ji Kim, Whan-Gook Nho, Seoae Cho, Heebal Kim, and Hyun-Jeong Lee. Comprehensive identification of sexually dimorphic genes in diverse cattle tissues using RNA-seq. BMC Genomics. 2016. [LINK]
2  S. S. Choe, K. C. Shin, S. Ka, Y. K. Lee, J.-S. Chun and J. B. Kim. Macrophage HIF-2 ameliorates adipose tissue inflammation and insulin resistance in obesity. Diabetes 2014 Accepted
3  Y. H. Son, S. Ka, A. Y. Kim and J. B. Kim. Regulation of Adipocyte Differentiation via microRNAs. Review. Endocrinol Metabol.2014 29(2). In press.
4  S. Ka, E. Markljung, H. Ring, F. W. Albert, M. Harun-Or-Rashid, P. Wahlberg, P. M. Garcia-Roves, J. R. Zierath, D. M. Denbow, S. Pääbo, P. B. Siegel, L. Andersson and F. Hallböök. Expression of carnitine palmitoyl-CoA transferase-1B is influenced by a cis-acting eQTL in two chicken lines selected for high and low body weight. Physiol Genomics 2013 45: 367-376
5  S. Ka, F. W. Albert, D. M. Denbow, S. Pääbo, P. B. Siegel, L. Andersson and F. Hallböök,. Differentially expressed genes in hypothalamus in relation to genomic regions under selection in two chicken lines resulting from divergent selection for high or low body weight. Neurogenetics. 2011 12(3):211-21
6  C.- J. Rubin, M. C. Zody, J. Eriksson, J. R. S. Meadows, E. Sherwood, M. T. Webster, L. Jiang, M. Ingman, T. Sharpe, S. Ka, F. Hallböök, F. Besnier, Ö. Carlborg, B. Bed'hom, M. Tixier-Boichard, P. Jensen, P. Siegel, K. Lindblad-Toh & L. Andersson. Whole-genome resequencing reveals loci under selection during chicken domestication. Nature 2010 464(7288):587-91.
7  S. Ka, S. Kerje, L. Bornold, U. Liljegren, P. B. Siegel, L. Andersson, and F. Hallböouml;k. Proviral integrations and expression of endogenous avian leucosis virus during long term selection for high and low body weight in two chicken lines. Retrovirology 2009 6:68.
8  S. Ka, J. Lindberg, L. Strömstedt, C. Fitzsimmons, N. Lindqvist, J. Lundeberg, P. B. Siegel, L. Andersson, F. Hallböök,. Extremely different behaviors in high and low body weight lines of chicken are associated with differential expression of genes involved in neuronal plasticity. J Neuroendocrinol. 2009 21(3):208-16.
9  G. Apostolova, R. Dorn, S. Ka, F. Hallböök, J. Lundeberg, K. Liser, V. Hakim, C. Brodski, T. M. Michaelidis, G. Dechant,. Neurotransmitter phenotype-specific expression changes in developing sympathetic neurons. Mol Cell Neurosci. 2007 35(3):397-408.
10  YS. Hong, S. Ka, S. Kim, Y. Park and S. Kang,. p80 coilin, a coiled body-specific protein, interacts with ataxin-1, the SCA1 gene product. Biochem Biophys Acta. 2003 1638(1):35-42.
11  S. Hong, S. Kim, S. Ka, I. Choi and S. Kang. USP7, a ubiquitin-specific protease, interacts with ataxin-1, the SCA1 gene product. Mol Cell Neurosci. 2002 20(2):298-306

 Student Alumni
Sidong Kim
  
Title of Thesis : Simulation studies on comparative genetic gains from different bull selection strategies of Korean cattle (hanwoo, bos taurus coreanae). 2007. Ph.D
Current Position : Agriculture Researcher in National Institute of Animal Science
Publication(2004-2007)
1  Sidong Kim, Agapita Salces, Hongrip Min, Kwanghyun Cho and Heebal Kim. Inbreeding Levels and Pedigree Structure of Landrace, Yorkshire and Duroc Populations of Major Swine Breeding Farms in Republic of Korea. 2006. AJAS 9:1217-1224

Sunjin Moon
  
Title of Thesis : Genome-Wide detection of selective sweeps in domesticated animals. 2012. Ph.D
Title of Thesis : Comparative Study of Molecular Evolution and Genetics of Mitochondrial DNA and Proteins in Animals. 2006. M.Sc
Publication(2005-2012)
1  Seok-Seong Kang, Hye Jin Kim, Mi Seon Jang, Sunjin Moon, Sang In Lee, Jun Ho Jeon, Jung Eun Baik, Ok-Jin Park, Young Min Son, Gi Rak Kim, Donghyun Joo, Heebal Kim, Jae Yong Han, Cheol-Heui Yun, Seung Hyun Han. Gene expression profile of human peripheral blood mononuclear cells induced by Staphylococcus aureus lipoteichoic acid 2012. International Immunopharmacology 13:454-460 (SCI)
2  Seung Pyo Gong, Heebal Kim, Eun Ju Lee, Seung Tae Lee, Sunjin Moon, Ho-Joon Lee and Jeong Mook Lim. Change in Gene Expression of Mouse Embryonic Stem Cells Derived from Parthenogenetic Activation. 2009. Human Reproduction 24:4:805-814 (SCI)
3  Sang In Lee, Woon Kyu Lee, Ji Hye Shin, Beom Ku Han, Sunjin Moon, Seoae Cho, Taesung Park, Heebal Kim, and Jae Yong Han. Sexually dimorphic gene expression in the chick brain before gonadal differentiation. 2009. Poultry Science 88:1003-1015 (SCI)
4  HyoYoung Kim, Sunjin Moon and Heebal Kim. Functional Prediction of Imprinted Genes in Chicken Based on a Mammalian Comparative Expression Network. 2008. Genomics & Informatics v6(1):32-35
5  Sunjin Moon and Heebal Kim. Organization and evolution of mitochondrial gene clusters in human. 2008. Genomics in press (SCI)
6  Xiaoping Li, Zhi-Liang Hu, Kyungtag Do, Sunjin Moon, Youkyoung Ha, Heebal Kim, Bong-Hwan Choi, Max Rothschild, Jmaes Reedcy and Kwan-Suk Kim. Development and characterization of an in silico coding gene SNP map in pigs. 2008. Animal Genetics. in press (SCI)
7  Jee Young Lee, Jeong Mook Lim, Duk Kyung Kim, Ying Hui Zheng, Sunjin Moon, Beom Ku Han, Ki DuK Song, Heebal Kim and Jae Yong Han. Identification and Gene Expression Profiling of the Pum1 and Pum2 Members of the Pumilio Family in the Chicken. 2008. Molecular Reproduction and Development 75:184-190 (SCI)
8  Hakhyun Ka, Heewon Seo, Mingoo Kim, Sunjin Moon, Heebal Kim and Chang-Kyu Lee. Gene Expression Profiling of the Uterus with Embryos Cloned by Somatic Cell Nuclear Transfer on Day 30 of Pregnancy. 2007. Animal Reproduction Science in press (SCI)
9  Bo R Lee, Heebal Kim, Tae S Park, Sunjin Moon, Seoae Cho, Taesung Park, Jeong M Lim and Jae Y Han A set of stage-specific gene transcripts identified in EK stage X and HH stage 3 chick embryos. 2007. BMC Developmental Biology 7:60 (SCIE)
10  Heebal Kim, Tae Sub Park, Woon Kyu Lee, Sunjin Moon, Jin Nam Kim, Ji Hye Shin, Jin Gyoung Jung, Seon Duk Lee, Sang Hyun Park, Kyung Je Park, Mi A Kim, Sang Su Shin, Tae Min Kim, Jungrye Nam, Yeonkyung Kang, Jeong Mook Lim, Jae Yong Han. MPSS profiling of embryonic gonad and primordial germ cells in chicken. 2007. Physiological Genomics 11;29(3):253-9 (SCI)
11  Sunjin Moon, Hyoung Doo Shin, Hyun Sub Cheong, Hye Young Cho, Sohg Namgoong, Eun Mi Kim, Chang Su Han, Samsun Sung and Heebal Kim. BcSNPdb: Bovine coding region single nucleotide polymorphisms located proximal to quantitative trait loci. 2007. Journal of Biochemistry and Molecular Biology 40(1):95-9 (SCIE)
12  Heebal Kim, Dajeong Lim, Beom Ku Han, Samsun Sung, Mina Jeon, Sunjin Moon, Yeonkyung Kang, Jungrye Nam and Jae Yong Han. ChickGCE: A novel germ cell EST database for studying the early developmental stage in chickens. 2006. Genomics 252-257 (SCI)
13  Kyung-Tai Lee, Eung-Woo Park, Sunjin Moon, Hye-Sook Park, Hyung-Yong Kim, Kyung-Soo Kang, Mi-jeong Byun, Cheong-il Cheong, Sung-jong Oh, Heebal Kim, Dong-Sang Suh, Tae-Hun Kim. Genomic sequence analysis of a potential QTL region for fat trait on pig chromosome 6. 2006. Genomics 87:218-224 (SCI)

Dajeong Lim
  
Title of Thesis : Bioinformatic analysis of candidate genes affecting intramuscular fat in cattle. 2012. Ph.D
Title of Thesis : Bioinformatics study on functional implication of alternative splicing. 2006. M.Sc
Current Position : Researcher in National Institute of Animal Science
Publication(2005-2014)
1  Dajeong Lim, Nam-Kuk Kim, Seung-Hwan Lee, Hye-Sun Park, Yong-Min Cho, Han-Ha Chai and Heebal Kim. Characterization of Genes for Beef Marbling Based on Applying Gene Coexpression Network. 2014. International Journal of Genomics.
2  Dajeong Lim, Seung-Hwan Lee, Nam-Kuk Kim, Yong-Min Cho, Han-Ha Chai1, Hwan-Hoo Seong and Heebal Kim. Gene Co-expression Analysis to Characterize Genes Related to Marbling Trait in Hanwoo (Korean) Cattle. 2013. Asian-Australasian Journal of Animal Sciences.
3  Dajeong Lim, Nam-Kuk Kim, Hye-Sun Park, Seung-Hwan Lee, Yong-Min Cho, Sung Jong Oh, Tae-Hun Kim, Heebal Kim. Identification of Candidate Genes related to Bovine Marbling using Pro-tein-Protein Interaction Networks. 2011. International Journal of Biological Sciences.
4  Dajeong Lim, Kyung-Tai Lee, Jong Eun Park, Heebal Kim, Tae-Hun Kim, Bong-Hwan Choi, Myung Jick Kim, Hye-Sun Park, Gul-Won Jang. Analysis of gene expression profiles from subcutaneous adipose tissue of two pig breeds. 2011. Genes & Genomics
5  Dajeong Lim, Seung Hwan Lee, Yong Min Cho, Duhak Yoon, Younhee Shin, Kyu Won Kim, Hye Sun Park, Heebal Kim. Transcript profiling of expressed sequence tags from intramuscular fat, longissimus dorsi muscle and liver in Korean cattle (Hanwoo). 2010. BMB reports.
6  Dajeong Lim, Yong-Min Cho, Seung-Hwan Lee, Samsun Sung, Jungrye Nam, Duhak Yoon, Younhee Shin, Hye-Sun Park and Heebal Kim. An integrated genomic resource based on Korean cattle (Hanwoo) transcripts. 2010. Austraiasian Journal of Animal Sciences.
7  Kyung-Tai Lee, Mi-Jeong Byun, Kyung-Soo Kang, Eung-Woo Park, Seung-Hwan Lee, Seoae Cho, HyoYoung Kim, Kyu-Won Kim, TaeHeon Lee, Jong-Eun Park, WonCheoul Park, DongHyun Sh in, Hong-Seog Park, Jin-Tae Jeon, Bong-Hwan Choi, Gul-Won Jang, Sang-Haeng Choi, Dae-Won Kim, Dajeong Lim, Hae-Suk Park, Mi-Rim Park, Jurg Ott, Lawrence B. Schook, Tae-Hun Kim & Heebal Kim. Neuronal genes for subcutaneous fat thickness in human and pig are identified by local genomic sequencing and combined SNP association study. 2010. PLoS ONE.
8  Kyung-Tai Lee1, Mi-Jeong Byun, Dajeong Lim (Co-first author), Kyung-Soo Kang, Nam-Soon Kim, Jung-Hwa Oh, Chung-Soo Chung, Hae-Suk Park, Seok-Ki Im, Heebal Kim, Tae-Hun Kim. Full-length enriched cDNA library construction from tissues related to energy metabolism in pig. 2009. Molecules and Cells. (SCI IF:2.023)
9  Dajeong Lim, Yong-Min Cho, Kyung-Tai Lee, Yeonkyung Kang, Samsun Sung, Jungrye Nam, Eung-Woo Park, Sung-Jong Oh, Seok-Ki Im and Heebal Kim. The Pig Genome Database (PiGenome): An integrated database for pig genome research. 2009. Mammalian Genome 20:60-66 (SCI IF:2.289)
10  J. H. Shin, H. Kim, D. Lim, M. Jeon, B. K. Han, T. S. Park, J. K. Kim, H. S. Lillehoj, B. W. Cho and J. Y. Han. Analysis of chicken embryonic gonad ESTs. 2006. Animal Genetics
11  Tae-Hun Kim, Nam-Soon Kim, Dajeong Lim, Kyung-Tai Lee, Jung-Hwa Oh, Hye-Sook Park, Gil-Won Jang, Hyung-Yong Kim, Mina Jeon, Bong-Hwan Choi, H. Y. Chung and Heebal Kim. Generation and Analysis of Large-Scale Expressed Sequence Tags (ESTs) from a Full-Length Enriched cDNA Library of Porcine Backfat Tissue. 2006. BMC Genomics
12  Heebal Kim, Dajeong Lim, Beom Ku Han, Samsun Sung, Mina Jeon, Sunjin Moon, Yeonkyung Kang, Jungrye Nam and Jae Yong Han. ChickGCE: A novel germ cell EST database for studying the early developmental stage in chickens. 2006. Genomics
13  Jae Y Han, Tae S Park, Jin N Kim, Mi A Kim, Dajeong Lim, Jeong M Lim and Heebal Kim. Gene expression profiling of chicken primodrdial germ cell ESTs. BMC Genomics
14  Dajeong Lim, Hee-Seok Oh and Heebal Kim. Theoretical Peptide Mass Distribution in the Non-Redundant Protein Database of the NCBI. 2006. Genomics & Informatics
15  Duk Kyung Kim, Dajeong Lim, Bo Ram Lee, Ji Hye Shin, Heebal Kim and Jae Young Han. Analysis of testis-specific transcripts in the chicken. 2005. Animal Genetics
16  Namshin Kim, Dajeong Lim, Sanghyuk Lee and Heebal Kim. ASePCR: Alternative splicing electronic RT-PCR in multiple tissues and organs. 2005. Nucleic Acids Research

Seungyoon Oh
Title of Thesis : Powerful Usage of Relative Criteria to Detect Adaptive Evolution Using the Ratio of Nonsynonymous to Synonymous Substitutions (dN/dS). 2010. M.Sc
Current Position : Working in Procter & Gamble
Publication(2009-2010)
1  Jong-Eun Park, Jeong-Ran Lee, Seungyoon Oh, Jin Woo Lee, Hee-Seok Oh, heebal Kim. Principal components analysis applied to genetic evaluation of racing performance of Thoroughbred race horses in Korea. 2010. Livestock Science. 135:293-299
2  Hee-Seok Oh, Dongik Jang, Seungyoon Oh and heebal Kim. Improved Statistical Testing of Two-class Microarrays with a Robust Statistical Approach. 2010. Interdisciplinary Bio Central. 2(4):1-6
3  Seungyoon Oh, Jong Eun Park, Jeong Ran Lee, Jin Woo Lee, Hee Seok Oh and Heebal Kim. Estimation of Genetic Parameters and Annual Trends for Racing Times of Thoroughbred Racehorses. 2009. J.Anim Sci. & Technol.(Kor.) 51(2) 129-134

Haitham
  
Title of Thesis : Algorithm to detect the conservative proteins in species of high mutation rate. 2010. M.Sc
Current Position : Ph.D Candidate
Publication(2009-2010)
NONE

Kwangnyeong Lee
Title of Thesis : Molecular epidemiology and evolution of Foot-and-mouth disease virus strains isolated in Asia. 2011. Ph.D
Current Position : Researcher in National Veterinary Reasearch & Guarantine Service
Publication(2005-2011)
1  Kwang-Nyeong Lee, Tung Nguyen, Su-Mi Kim, Jong-Hyeon Park, Hoa T. Do, Huong T.Ngo, Duong T. Mai, Seo-Yong Lee, Cam V. Nguyen, Sook Hee Yoon, Chang-Hee Kweon, In-Soo Cho, Heebal Kim. Direct typing and molecular evolutionary analysis of field samples of foot-and-mouth disease virus collected in Vietnam between 2006 and 2007. 2011. Veterinary Microbiology.
2  Yoon, S.H., K.-N. Lee, J.-H. Park, H. Kim. Molecular epidemiology of foot-and-mouth disease virus serotypes A and O with emphasis on Korean isolates: temporal and spatial dynamics. 2010. Arch. Virol.
3  Kwang-Nyeong Lee, Lae-Ku Oem, Jong-Hyeon Park, Su-Mi Kim, Seo-Yong Lee, Sh, Tserendorj, R. Sodnomdarjaa, Yi-Seok Joo, Heebal Kim. Evidence of recombination in a new isolate of foot-and mouth disease virus serotype Asia 1. 2009. Virus Research. 139:117-121 (SCI IF:2.810)
4  Park JH, Kim SJ, Oem JK, Lee KN, Kim YJ, Kye SJ, Park JY, Joo YS. Enhanced immune response with foot-and-mouth disease virus VP1 and interleukin-1 fusion genes. J Vet Sci. 2006 Sep;7(3):257-62.
 
Taeheon Lee
Title of Thesis : Estimating heritability, performing genome-wide association study and predicting the disease risk using SNP. 2013. Ph.D
Current Position : Working in Green Cross
Publication(2008-2013)
1  Jian Yang, Taeheon Lee, Jaemin Kim, Myeong-Chan Cho, Bok-Ghee Han, Jong-Young Lee, Hyun-Jeong Lee, Seoae Cho and Heebal Kim. Ubiquitous polygenicity of human comple x traits: genome-wide analysis of 49 traits in Koreans. 2013. PLoS Genetics.
2  Taeheon Lee, Seoae Cho, Kang Seok Seo, Jongsoo Chang, Heebal Kim and Duhak Yoon. Genetic variants and signatures of selective sweep of Hanwoo population (Korean nat ive cattle). 2013. BMB Reports.
3  Jin-Kyu Park, Hye-Sun Kim, Kyung-Jun Uh, Kwang-Hwan Choi, Hyeong-Min Kim, Taeheon Lee, Byung-Chul Yang, Hyen-Jong Kim, Hak-Hyun Ka, Heebal Kim, Chang-Kyu Lee. Prime d pluripotent cell lines derived from various embryonic origins and somatic cells in pig. 2013. PLoS ONE.
4  Zewdu Edea, Hailu Dadi, Sang-Wook Kim, Tadelle Dessie, Taeheon Lee, Heebal Kim, Jong-Joo Kim, Kwan-Suk Kim. Genetic diversity, population structure and relationship s in indigenous cattle populations of Ethiopia and Hanwoo breeds using SNP markers. 2013. Frontiers in Livestock Genomics.
5  Jaemin Kim, Taeheon Lee, Tae-Hun Kim, Kyung-Tai Lee, Heebal Kim. An integrated approach of comparative genomics and heritability analysis of pig and human on obesit y trait: evidence for candidate genes on human chromosome 2. 2012. BMC Genomics.
6  Hyeongmin Kim, Taeheon Lee, Samsun Sung, Changkyu Lee & Heebal Kim. 2012. Reanalysis of Ohno's hypothesis on conservation of the size of the X chromosome in mammals . Animal Cells and Systems.
7  Jun-Sang Ham, Taeheon Lee, Mi-Jeong Byun, Kyung-Tae Lee, Min-Kyung Kim, Gi-Sung Han, Seok-Geun Jeong, Mi-Hwa Oh, Dong-Hun Kim, Heebal Kim. 2011. Complete Genome Seq uence of Bifidobacterium longum subsp. longum KACC 91563. Journal of Bacteriology.
8  Jun-Sang Ham, Seung-Gyu Lee, Seok-Geun Jeong, Mi-Hwa Oh, Dong-Hun Kim, Taehun Lee, Bo-Young Lee, Sook Hee Yoon, Heebal Kim., 2010. Powerful usage of phylogeneticall y diverse Staphylococcus aureus control strains for detecting multidrug resistance genes in transcriptomics studies. Molecules and Cells.
9 Rami A. Dalloul, Julie A. Long, Aleksey V. Zimin, Luqman Aslam, Kathryn Beal, Le Ann Blomberg , David W. Burt, Oswald Crasta, Richard P.M.A. Crooijmans , Kristal Cooper, Roger A. Coulombe, Supriyo De, Mary E. Delany, Jerry B. Dodgson, Jennifer J. Dong , Clive Evans, Paul F licek, Liliana Florea, Otto Folkerts, Martien A.M. Groenen, Tim T. Harkins, Javier Herrero, Steve Hoffmann, Hendrik-Jan Megens, Andrew Jiang, Pieter de Jong, Pete Kaiser, Heebal K im, Kyu-Won Kim, Sungwon Kim, David Langenberger, Mi-Kyung Lee, Taeheon Lee, Shrinivasrao Mane, Guillaume Marcais, Manja Marz, Audrey P. McElroy, Thero Modise, Mikhail Nefe dov, C?dric Notredame, Ian R. Paton, William S. Payne, Geo Pertea, Dennis Prickett, Daniela Puiu, Dan Qioa, Emanuele Raineri, Magali Ruffier, Steven L. Salzberg, Michael C. Schatz , Chantel Scheuring, Carl J. Schmidt, Steven Schroeder, Stephen MJ Searle, Edward J. Smith, Jacqueline Smith, Tad S. Sonstegard, Peter F. Stadler, Hakim Tafer, Zhijian (Jake) Tu, Curtis P. Van Tassell, Albert J. Vilella, Kelly P. Williams, James A. Yorke, Liqing Zhang, Hong-Bin Zhang, Xiaojun Zhang, Yang Zhang, and Kent M. Reed. Multi-platform Next Generat ion Sequencing of the Domestic Turkey (Meleagris gallopavo): Genome Assembly and Analysis. 2010. PLoS Biology.
10  yung-Tai Lee, Mi-Jeong Byun, Kyung-Soo Kang, Eung-Woo Park, Seung-Hwan Lee, Seoae Cho, HyoYo ung Kim, Kyu-Won Kim, TaeHeon Lee, Jong-Eun Park, WonCheoul Park, DongHyun Shin, Hong-Seog Park, Jin-Tae Jeon, Bong-Hwan Choi, Gul-Won Jang, Sang-Haeng Choi, Dae-Won Kim, D ajeong Lim, Hae-Suk Park, Mi-Rim Park, Jurg Ott, Lawrence B. Schook, Tae-Hun Kim & Heebal Kim. Neuronal genes for subcutaneous fat thickness in human and pig are identified by local genomic sequencing and combined SNP association study. 2010. PLoS ONE.< /em>
11  Joon-Ho Lee, Taeheon Lee, Hak-Kyo Lee, Byung-Wook Cho, Dong-Hyun Shin, Kyoung-Tag Do, Samsun Sung, Woori Kwak, Hyeon Jeong Kim, Heebal Kim, Seoae Cho, Kyung-Do Park.Thoroughbred Horse Single Nucleotide Polymorphism and Expression Database: HSDBAsian Australas. J. Anim. Sci. Published 2014 August 20 [LINK]
12  Jintaek Im, Taeheon Lee, Jun Ho Jeon, Jung Eun Baik, Kyoung Whun Kim, Seok-Seong Kang, Cheol-Heui Yun, Heebal Kim, Seung Hyun Han.Gene expression profiling of bovine mammary gland epithelial cells stimulated with lipoteichoic acid plus peptidoglycan from Staphylococcus aureusInternational Immunopharmacology, July 2014 [LINK]
 
Hyeongmin Kim


Title of Thesis : Evolutionary bioinformatic studies to characterize mammalian genomic features using next generation sequencing. 2013. Ph.D
Current Position : Korea Research Institute of Bioscience & Biotechnology (KRIBB) / Post-doctor
Publication(2011-2015)
1  Hyeongmin Kim, Ki-Duk Song, Hyeon Jeong Kim, WonCheoul Park, Jaemin Kim, Taeheon Lee, Dong-Hyun Shin, Woori Kwak, Young-jun Kwon, Samsun Sung, Sunjin Moon, Kyung-Tai Lee, Namshin Kim, Joon Ki Hong, Kyung Yeon Eo, Kang Seok Seo, Girak Kim, Sungmoo Park, Cheol-Heui Yun, Hyunil Kim, Kimyung Choi, Jiho Kim, Woon Kyu Lee, Duk-Kyung Kim, Jae-Don Oh, Eui-Soo Kim, Seoae Cho, Hak-Kyo Lee, Tae-Hun Kim, Heebal Kim. Exploring the Genetic Signature of Body Size in Yucatan Miniature Pig. 2015. PLoS ONE.
2  Hyeongmin Kim, Taeheon Lee, WonCheoul Park, Jin Woo Lee, Jaemin Kim, Bo-Young Lee, Hyeonju Ahn, Sunjin Moon,Seoae Cho, Kyoung-Tag Do, Heui-Soo Kim, Hak-Kyo Lee, Chang-Kyu Lee, Hong-Sik Kong, Young-Mok Yang, Jongsun Park, Hak-Min Kim, Byung Chul Kim, Seungwoo Hwang, Jong Bhak, Dave Burt, Kyoung-Do Park, Byung-Wook Cho, and Hee bal Kim. Peeling Back the Evolutionary Layers of Molecular Mechanisms Responsive to Exercise-Stress in the Skeletal Muscle of the Racing Horse. 2013. DNA Research.<
3  Hyeongmin Kim, Taeheon Lee, Samsun Sung, Changkyu Lee & Heebal Kim. Reanalysis of Ohno's hypothesis on conservation of the size of the X chromosome in mamma ls. 2012. Animal Cells and Systems.
4  Jin-Kyu Park, Hye-Sun Kim, Kyung-Jun Uh, Kwang-Hwan Choi, Hyeong-Min Kim, Taeheon Lee, Byung-Chul Yang, Hyen-Jong Kim, Hak-Hyun Ka, Heebal Kim, Chang-Kyu Le e. Primed pluripotent cell lines derived from various embryonic origins and somatic cells in pig. 2013. PLoS ONE.
5  Hyung-jeong Lee, Mi Jang, Hyeongmin Kim, Woori Kwak, WonCheoul Park, Jae-Yeon Hwang, Chang-Kyu Lee, Gul Won Jang, Mina Park, Hyeong-Cheol Kim, Jin Young Jeo ng, Kang Seok Seo, Heebal Kim, Seoae Cho, Bo-Young Lee. Comparative transcriptome analysis of adipose tissues reveals that ECM-receptor interaction involved in the depot-s pecific adipogenesis in cattle. 2013. PLoS One.
6  Kyung-Do Park, Hyeongmin Kim, Jae Yeon Hwang, Chang-Kyu Lee, Kyoung-Tag Do, Heui-Soo Kim, Young-Mok Yang, Young-jun Kwon, Jaemin Kim, Hyeon Jeong Kim, Ki-Du k Song, Jae-Don Oh, Heebal Kim, Byung-Wook Cho, Seoae Cho, Hak-Kyo Lee. Copy Number Deletion Has Little Impact on Gene Expression Levels in RacehorsesAsian Australas. J. Anim. Sci. Published 2014 August 20 [LINK]

Kyu-Won Kim

Title of Thesis : Improvements on algorithms for estimating gene function, detecting adaptive gene evolution, and defining orghologous genes. 2014. Ph.D
Current Position : KongJu National University / Department of Plant Resources Colleage of Industrial Sciences Kongju National University / Research Professor
Publication(2007-2013)
1 Kyu-Won Kim, David W. Burt, Heebal Kim, Seoae Cho.Identification of differentially evolved genes: An alternative approach to detection of accelerated molecular evolution from genome-wide comparative data. 2013. Evolutionary Bioinformatics.
2 Yinhua Huang, Yingrui Li, David W Burt, Hualan Chen, Yong Zhang, Wubin Qian, Heebal Kim, Shangquan Gan, Yiqiang Zhao, Jianwen Li, Kang Yi, Huapeng Feng, Pengyang Zhu, BoLi, Qiuyue Liu, Suan Fairley, Katharine E Magor, Zhenlin Du, Xiaoxiang Hu, Laurie Goodman, Hakim Tafer, Alain Vignal, Taeheon Lee, Kyu-Won Kim, Zheya Sheng, Yang An, Steve Searle, Javier Herrero, Martien A M Groenen, ..., Frederique Pitel, Jun Wang & Ning Li. The duck genome and transcriptome provide insight into an avian influenza virus reservoir species. 2013. Nature Genetics
3 International Pig Genome Consortium. Analyses of pig genomes provide insight into porcine demography and evolution. 2012. Nature doi:10.1038/nature11622
4 Kyu-Won Kim, Hun-Ki Chung, Gyu-Taek Cho, Kyung-Ho Ma, Dorothy Chandrabalan, Jae-Gyun Gwag, Tae-San Kim, Eun-Gi Cho and Yong-Jin Park. PowerCore: a program applying the advanced strategy with a heuristic search for establishing core sets. Bioinformatics 2007 23(16):2155-2162
5 Dajeong Lim, Seung Hwan Lee, Yong Min Cho, Duhak Yoon, Younhee Shin, Kyu Won Kim, Hye Sun Park, Heebal Kim. Transcript profiling of expressed sequence tags from intramuscular fat, longissimus dorsi muscle and liver in Korean cattle (Hanwoo). 2009. BMB reports.
6 Rami A. Dalloul, Julie A. Long, Aleksey V. Zimin, Luqman Aslam, Kathryn Beal, Le Ann Blomberg, David W. Burt, Oswald Crasta, Richard P.M.A. Crooijmans , Kristal Cooper, Roger A. Coulombe, Supriyo De, Mary E. Delany, Jerry B. Dodgson, Jennifer J. Dong , Clive Evans, Paul Flicek, Liliana Florea, Otto Folkerts, Martien A.M. Groenen, Tim T. Harkins, Javier Herrero, Steve Hoffmann, Hendrik-Jan Megens, Andrew Jiang, Pieter de Jong, Pete Kaiser, Heebal Kim, Kyu-Won Kim, Sungwon Kim, David Langenberger, Mi-Kyung Lee, Taeheon Lee, Shrinivasrao Mane, Guillaume Marcais, Manja Marz, Audrey P. McElroy, Thero Modise, Mikhail Nefedov, C?dric Notredame, Ian R. Paton, William S. Payne, Geo Pertea, Dennis Prickett, Daniela Puiu, Dan Qioa, Emanuele Raineri, Magali Ruffier, Steven L. Salzberg, Michael C. Schatz, Chantel Scheuring, Carl J. Schmidt, Steven Schroeder, Stephen MJ Searle, Edward J. Smith, Jacqueline Smith, Tad S. Sonstegard, Peter F. Stadler, Hakim Tafer, Zhijian (Jake) Tu, Curtis P. Van Tassell, Albert J. Vilella, Kelly P. Williams, James A. Yorke, Liqing Zhang, Hong-Bin Zhang, Xiaojun Zhang, Yang Zhang, and Kent M. Reed. Multi-platform Next Generation Sequencing of the Domestic Turkey (Meleagris gallopavo): Genome Assembly and Analysis. 2010. PLoS Biology.
7 Kyung-Tai Lee, Mi-Jeong Byun, Kyung-Soo Kang, Eung-Woo Park, Seung-Hwan Lee, Seoae Cho, HyoYoung Kim, Kyu-Won Kim, TaeHeon Lee, Jong-Eun Park, WonCheoul Park, DongHyun Shin, Hong-Seog Park, Jin-Tae Jeon, Bong-Hwan Choi, Gul-Won Jang, Sang-Haeng Choi, Dae-Won Kim, Dajeong Lim, Hae-Suk Park, Mi-Rim Park, Jurg Ott, Lawrence B. Schook, Tae-Hun Kim & Heebal Kim. Neuronal genes for subcutaneous fat thickness in human and pig are identified by local genomic sequencing and combined SNP association study. 2010. PLoS ONE.


Young-jun Kwon

Title of Thesis : Bioinformatics research using next generation sequencing data to compare genomic features between populations and a review of future genetic resources. 2014. M.sc
Current Position : Labgenomics
Publication( 2012 ~ 2014 )
None

HyoYoung Kim

Title of Thesis : Bioinformatic studies to identify human genomic features based on structural variants. 2014. Ph.D
Current Position : CJ CHEILJEDANG / BIO) OMICS Analysis Team / Senior Researcher
Publication( 2007 ~ 2014)
1  HyoYoung Kim, Samsun Sung, Seoae Cho, Tae-Hun Kim, Heebal Kim. VCS: tool for Visualizing Copy number variation and Single nucleotide polymorphism. 2014. Asian-Austraiasian Journal of Animal Sciences. 2014;27(12): 1691-1694.
2  HyoYoung Kim, Won Gi Yoo, Junhyung Park, Heebal Kim, Byeong-Chul Kang. Semantic medeling for SNPs associated with ethnic disparities in HapMap samples. 20 14 Accepted. Genomics & Informatics
3  HyoYoung Kim, Jun-Hyung Park, Heebal Kim and Byeong-Chul Kang. Semantic networks for genome-wide CNV associated with AST and ALT in Korean cohorts. 2013.< b> Mol Cell Toxicol
4  HyoYoung Kim, Mi-Jeong Byun, and heebal Kim. A replication study of genome-wide CNV association for hepatic biomarkers identifies nine genes associate d with the liver function. 2011. BMB reports
5  HyoYoung Kim, Seoae Cho, Jeongmi Yu, Samsun Sung, and heebal Kim. Analysis of copy number variation in a cohort of 8,842 Korean individuals reveals 39 genes associated with hepatic biomarkers AST and ALT. 2010. BMB reports
6  Kyung-Tai Lee, Mi-Jeong Byun, Kyung-Soo Kang, Eung-Woo Park, Seung-Hwan Lee, Seoae Cho, HyoYoung Kim, Kyu-Won Kim, TaeHeon Lee, Jong-Eun Park, WonCheoul Park, D ongHyun Shin, Hong-Seog Park, Jin-Tae Jeon, Bong-Hwan Choi, Gul-Won Jang, Sang-Haeng Choi, Dae-Won Kim, Dajeong Lim, Hae-Suk Park, Mi-Rim Park, Jurg Ott, Lawrence B. Schook, Tae-H un Kim & Heebal Kim. Neuronal genes for subcutaneous fat thickness in human and pig are identified by local genomic sequencing and combined SNP association study. 2010. PLoS ONE
7  HyoYoung Kim, Heebal Kim. Comparative analysis of repetitive elements of imprinting genes reveals eleven candidate imprinting genes in cattle. Asian-Australasian Journal of Animal Sciences
8  HyoYoung Kim, Sunjin Moon and Heebal Kim. Functional Prediction of Imprinted Genes in Chicken Based on a Mammalian Comparative Expression Network. 2008. Genomics & Informatics v6(1):32-35


DongHyun Shin

Title of Thesis : Deciphering genomic variation and effective population size using NGS and SNP data in mammals. 2014. Ph.D
Current Position : Chonbuk National University / Post-doctor.
Publication
1  Dong-Hyun Shin, Hyun-Jeong Lee, Seoae Cho, Hyeon Jeong Kim, Jae Yeon Hwang, Chang-Kyu Lee, JinYoung Jeong, Duhak Yoon, Heebal Kim. Deleted copy number variation of Hanwoo and Holstein using next generation sequencing at the population level. 2014. BMC Genomics. Accepted
2  Dong-Hyun Shin, Kwang-Hyun Cho, Kyoung-Do Park, Hyun-Jeong Lee, Heebal Kim. Accurate estimation of effective population size corrected using a genomic relationship matrix in dairy cattle. 2013. Asian-Austraiasian Journal of Animal Sciences.
3  Taeheon Lee, Dong-Hyun Shin, Seoae Cho, Hyun Sung Kang, Sung Hoon Kim, Hak-Kyo Lee, Heebal Kim and Kang-Seok Seo. Genome-wide association study of integrated meat q uality-related traits of the Duroc pig breed. 2013. Asian-Austraiasian Journal of Animal Sciences.
4  Bo-Young Lee, Dong Hyun Shin, Seoae Cho, Kang-Seok Seo, and Heebal Kim. Genome-wide analysis of copy number variations reveals that ageing processes influence body fat distribution in Korea Associated Resource (KARE) cohorts. 2012. Human Genetics.
5  Bo-Young Lee, Seoae Cho, DongHyun Shin, and heebal Kim. Genome-wide association study of copy number variations associated with pulmonary function measures in Ko rea Associated Resource (KARE) cohorts. 2010. Genomics.
6  Kyung-Tai Lee, Mi-Jeong Byun, Kyung-Soo Kang, Eung-Woo Park, Seung-Hwan Lee, Seoae Cho, HyoYoung Kim, Kyu-Won Kim, TaeHeon Lee, Jong-Eun Park, WonCheoul Park, DongHy un Shin, Hong-Seog Park, Jin-Tae Jeon, Bong-Hwan Choi, Gul-Won Jang, Sang-Haeng Choi, Dae-Won Kim, Dajeong Lim, Hae-Suk Park, Mi-Rim Park, Jurg Ott, Lawrence B. Schook, Tae-Hu n Kim & Heebal Kim. Neuronal genes for subcutaneous fat thickness in human and pig are identified by local genomic sequencing and combined SNP association study. 2010. PLoS ONE
7  Joon-Ho Lee, Taeheon Lee, Hak-Kyo Lee, Byung-Wook Cho, Dong-Hyun Shin, Kyoung-Tag Do, Samsun Sung, Woori Kwak, Hyeon Jeong Kim, Heebal Kim, Seoae Cho, Kyung-Do Park.Thoroug hbred Horse Single Nucleotide Polymorphism and Expression Database: HSDBAsian Australas. J. Anim. Sci. Published 2014 August 20 [LINK]


Jongeun Park

Title of Thesis : Genetic evaluation and association study of candidate gene using SNP and pedigree data in domestic animal. 2015. Ph.D
Current Position : Researcher in National Institute of Animal Science
Publication(2006 ~ 2015)
1  Yoo HJ, Kim K, Kim IH, Rho S-H, Park J-E, Lee KY, Kim SA, Choi BY, Kim N. Whole Exome Sequencing for a Patient with Rubinstein-Taybi Syndrome Reveals de Novo Variants besides an Overt CREBBP Mutation. International Journal of Molecular Sciences. 2015; 16(3):5697-5713.
2  Shin, D. H., Lee, J. W., Park, J. E., Choi, I. Y., Oh, H. S., Kim, H. J., & Kim, H. (2015). Multiple Genes Related to Muscle Identified through a Joint Analysis of a Two-stage Genome-wide Association Study for Racing Performance of 1,156 Thoroughbreds. Asian-Australasian Journal of Animal Sciences.
3  Jang, G. W., Park, J. E., Kim, T. H., & Kim, M. J. (2012). Breeding and Genetics: Gene Expression Profiling in Hepatic Tissue of two Pig Breeds. , 54(6), 383-394.
4  Lim, D., Lee, K. T., Park, J. E., Kim, H., Kim, T. H., Choi, B. H., & Jang, G. W. (2011). Analysis of gene expression profiles from subcutaneous adipose tissue of two pig breeds. Genes & Genomics, 33(6), 693-699.
5  Son, J. S., Jun, S. Y., Kim, E. B., Park, J. E., Paik, H. R., Yoon, S. J., ... & Choi, Y. J. (2010). Complete genome sequence of a newly isolated lytic bacteriophage, EFAP?1 of Enterococcus faecalis, and antibacterial activity of its endolysin EFAL?1. Journal of applied microbiology, 108(5), 1769-1779.
6  Subin Park, Jong-Eun Park, Soo-Churl Cho, Bung-Nyun Kim, Min-Sup Shin, Jae-Won Kim, In Hee Cho, Soon Ae Kim, Mira Park, Tae-Won Park, Jung-Woo Son, Un-Sun Chung, Hee Jeong Yoo. No association of the norepinephrine transporter gene (SLC6A2) and cogniti ve and behavioural phenotypes of patients with autism spectrum disorder. 2013. European Archives of Psychiatry and Clinical Neuroscience
7 Jong-Eun Park, Jeong-Ran Lee, Seungyoon Oh, Jin Woo Lee, Hee-Seok Oh, heebal Kim. Principal components analysis applied to genetic evaluation of racing performance in Korean Th oroughbred race horses. 2010. Livestock Science.
8  Seungyoon Oh, Jong Eun Park, Jeong Ran Lee, Jin Woo Lee, Hee Seok Oh and Heebal Kim. Estimation of Genetic Parameters and Annual Trends for Racing Times of Thoroughbred Racehorses. 2009. J.Anim Sci. & Technol.(Kor.) 51(2) 129-134
9 Kyung-Tai Lee, Mi-Jeong Byun, Kyung-Soo Kang, Eung-Woo Park, Seung-Hwan Lee, Seoae Cho, HyoYoung Kim, Kyu-Won Kim, TaeHeon Lee, Jong-Eun Park, WonCheoul Park, DongHyun Shin, Ho ng-Seog Park, Jin-Tae Jeon, Bong-Hwan Choi, Gul-Won Jang, Sang-Haeng Choi, Dae-Won Kim, Dajeong Lim, Hae-Suk Park, Mi-Rim Park, Jurg Ott, Lawrence B. Schook, Tae-Hun Kim & Heebal Kim. Neuronal genes for subcutaneous fat thickness in human and pig are identified by local genomic sequencing and combined SNP association study. 2010. PLoS ONE.


Jaemin Kim

Title of Thesis : Delineating the genetic landscape of mammals on the bases of genome-wide association study and positive selection scan using single nucleotide polymorphism. 2015. Ph.D
Current Position : National Institutes of Health(NIH).
Publication
1  Hyeongmin Kim, Ki-Duk Song, Hyeon Jeong Kim, WonCheoul Park, Jaemin Kim, Taeheon Lee, Dong-Hyun Shin, Woori Kwak, Young-jun Kwon, Samsun Sung, Sunjin Moon, Kyung-Tai Lee, Namshin Kim, Joon Ki Hong , Kyung Yeon Eo, Kang Seok S eo, Girak Kim, Sungmoo Park, Cheol-Heui Yun, Hyunil Kim, Kimyung Choi, Jiho Kim, Woon Kyu Lee, Duk-Kyung Kim, Jae-Don Oh, Eui-Soo Kim, Seoae Cho, Hak-Kyo Lee, Tae-Hun Kim, Heebal Kim. Exploring the Genetic Signature of Body Size in Yuc atan Miniature Pig. 2015. PLoS ONE.
2  Jung Youn Park, Yong-Rock An, Naohisa Kanda, Chul-Min An, Hye-suk An, Jung-Ha Kang, Eun Mi Kim, Du-Hae An, Hojin Jung, My unghee Joung, Myung Hum Park , Sook Hee Yoon, Bo-Young Lee, Taeheon Lee, Kyu-Won Kim, WonCheoul Park, DongHyun Shin, Youn gSub Lee, Jaemin Kim, Woori Kwak, Hyeon Jeong Kim, Young-Jun Kwon, Sunjin Moon, Yuseob Kim, David W Burt, Seoae Cho, Heebal Kim. Cetaceans evo lution: insights from the genome sequences of common minke whales. BMC Genomics. January 2015, 16:13 doi:10 .1186/s12864-015-1213-1.
3  Jaemin Kim, Seoae Cho, Kelsey Caetano-Anolles, Heebal Kim, Youn-Chul Ryu. Genome-wide detection and charac terization of positive selection in Korean Native Black Pig from Jeju Island. BMC Genetics. January 2015, 1 6:3 doi:10.1186/s12863-014-0 160-1.
4  Kyung-Do Park, Hyeongmin Kim, Jae Yeon Hwang, Chang-Kyu Lee, Kyoung-Tag Do, Heui-Soo Kim, Young-Mok Yang, Young-j un Kwon, Jaemin Kim, Hyeon Jeong Kim, Ki-Duk Song, Jae-Don Oh, Heebal Kim, Byung-Wook Cho, Seoae Cho, Hak-Kyo Lee. Copy Number Deletion Has L ittle Impact on Gene Expression Levels in RacehorsesAsian Australas. J. Anim. Sci. Published 2014 August 20 [LINK]
5  Hyun-Jeong Lee, Jaemin Kim, Taeheon Lee, Jun Kyu Son, Ho-Baek Yoon, Kwang-Soo Baek, Jin Young Jeong, Yong- Min Cho, Kyung-Tai Lee, Byoung-Chul Yang, Kwanghyeon Cho, Tae-Hun Kim, Eung Gi Kwon, Jungrye Nam, Woori Kwak, Seoae Cho, Heebal Kim. Deciphering the genetic blueprint behind Holstein milk proteins and production. 2014. Genome Biology and Evolution. Accep ted
6  Sung Wook Hwang, Nayoung Kim, Hye-Kyung Jung, Ji Hyun Park, Yoon Jin Choi, Heebal Kim, Jaemin Kim, Joo Sun g Kim, and Hyun Chae Jung. The association of SLC6A4 5-HTTLPR and TRPV1 945G>C with functional dyspepsia in Korea. 2014. Journal of Gastroent erology and Hepatology.
7  Woncheoul Park, Jaemin Kim, Hyeonjeong Kim, JaeYoung Choi, Jeong-Woong Park, Hyun-Woo Cho, Byeong-Woo Kim, Myung Hum Park, Teak-Soon Shin, Seong-Keun Cho, Jun-Kyu Park, Heebal Kim, Jae Yeon Hwang, Chang-Kyu Lee, HAK-KYO Lee, Se oae Cho, Byung-Wook Cho. Inv estigation of de novo unique differentially expressed genes related to evolution in exercise response during domesticatio n in Thoroughbred race horses. 2014. PLoS ONE.
8  Jaemin Kim, Taeheon Lee, Hyun-Jeong Lee and Heebal Kim. Genotype-environment interactions for quantitative traits in Korea Associated Resource (KARE) cohorts. 2014. BMC Genetics
9  Jaemin Kim, Taeheon Lee, Tae-Hun Kim, Kyung-Tai Lee, Heebal Kim. An integrated approach of comparative gen omics and heritability analysis of pig and human on obesit y trait: evidence for candidate genes on human chromosome 2. 2012. BMC Genomics.
10  Jian Yang, Taeheon Lee, Jaemin Kim, Myeong-Chan Cho, Bok-Ghee Han, Jong-Young Lee, Hyun-Jeong Lee, Seoae C ho and Heebal Kim. Ubiquitous polygenicity of human comple x traits: genome-wide analysis of 49 traits in Koreans. 2013. PLoS Genetics.
11  Hyeongmin Kim, Taeheon Lee, WonCheoul Park, Jin Woo Lee, Jaemin Kim, Bo-Young Lee, Hyeonju Ahn, Sunjin Moo n,Seoae Cho, Kyoung-Tag Do, Heui-Soo Kim, Hak-Kyo Lee, Cha ng-Kyu Lee, Hong-Sik Kong, Young-Mok Yang, Jongsun Park, Hak-Min Kim, Byung Chul Kim, Seungwoo Hwang, Jong Bhak, Dave Bur t, Kyoung-Do Park, Byung-Wook Cho, and Heebal Kim. Peeling Back the Evolutionary Layers of Molecular Mechanisms Responsive to Exercise-Stress in the Skeletal Muscle of the Racing Horse. 2013. DNA Research.
12  Sook Hee Yoon, Hyekwon Kim, Jaemin Kim, Hak-Kyo Lee, Bongkyun Park, Heebal Kim. Complete genome sequences of porcine reproductive and respiratory syndrome viruses: perspectives on their temporal and spatial dynamics. 2013. Molecular Biology Reports .

Sooyeon Lim

Title of Thesis : The use of next generation sequencing to decipher metagenome of domesticated animals. 2015. Ph.D
Current Position : Korea Research Institute of Bioscience & Biotechnology (KRIBB) / Microbiomics and Immunity Research Center / Post-doctor.
Publication
1  SooYeon Lim, Jaehyun Seo, Hyunbong Choi, Duhak Yoon, Jungrye Nam, Heebal Kim, Seoae Cho, and Jongsoo Chang . Metagenome Analysis of Protein Domain Collocation within Cellulase Genes of Goat Rumen Microbes. 2013. Asian-Aus traiasian Journal of Animal Sciences. 26(8): 1144-1151 [ LINK]
2  Sooyeon Lim, Dong-Hoon Lee, Woori Kwak, Hakdong Shin, Hye-Jin Ku, Jong-eun Lee, Gun Eui Lee, Heebal Kim, S ang-Ho Choi, Sangryeol Ryu, Ju-Hoon Lee.Comparative Genomic Analysis of Staphylococcus aureus FORC_001 and S. aureus MRSA 252 Reveal the Characteristi cs of Antibiotic Resistance and Virulence Factors for Human Infection. J. Microbiol. Biotechnol. 2014 Octo ber 23 DOI : 10.4014/jmb.1410.10005 [LINK]


Hyeonsoo Jeong

Title of Thesis : Trailing genomic signature to discover substantial information in genome data using bioinformatics approaches. 2016. M.Sc
Current Position : College of Agriculture, Consumer , and Environmental Sciences Animal Sciences Laboratory / Ph.D Candidate
Publication
1  Hyeonsoo Jeong, Samsun Sung, Taehyung Kwon, Minseok Seo, Kelsey Caetano-Anolles, Sang Ho Choi, Seoae Cho, Arshan Nasir, and Heebal Kim. HGTree: database of horizontally transferred genes determined by tree rec onciliation. Nucleic Acids Research. 2015. [LINK]
2  Hyeonsoo Jeong, Ki-Duk Song, Minseok Seo, Kelsey Caetano-Anolles, Jaemin Kim, Woori Kwak, Jae-don Oh, EuiSoo Kim, Dong Kee Jeong, Seoae Cho, Heebal Kim, Hak-Kyo Lee. Exploring evidence of positive selection r eveals genetic basis of meat quality traits in Berkshire pigs through whole genome sequencing. BMC Genetics 2015. [LINK]
3  Young-Sub Lee, Hyun-Soo Jeong, Mengistie Taye, Hyeon Jeong Kim, Youn-Chul Ryu, Seoae Cho. Genome-wide association study (GWAS) and its application f or improving the genomic estimated breeding values (GEBV) of the Berkshire pork quality traits. Asian-Australasian Journal of Animal Sciences. 2015.
4  Jeong,H.S., Jang,E.K., Jin,G.S., Seo,S., Park,S.P.. High-throughput diatom counting method based on lens-free shadow image an alysis. Sensors and Actuators B: Chemical, 2013.
5  Hyeon-Soo Jeong, Dae-Won Kim, Se-Yoon Chun, Samsun Sung, Hyeon-Jeong Kim, Seoae Cho, Heebal Kim, Sung-Jong Oh. Native Pig and Chicken Breed Database: NPCDB Asian Australas. J. Anim. Sci. Published 2014 August 20 [LINK]

Minseok Seo

Title of Thesis : Quantitative analysis of NGS data:application of linear statistical models in transcriptome and metagenome. 2016. Ph.D
Current Position : Department of Medicine, Harvard Medical School, Brigham and Women's Hospital, and Broad Institute.
Publication

WonCheoul Park

Title of Thesis : . 2017. Ph.D
Current Position :
Publication
1  Hyeongmin Kim, Ki-Duk Song, Hyeon Jeong Kim, WonCheoul Park, Jaemin Kim, Taeheon Lee, Dong-Hyun Shin, Woori Kwak, Young-jun Kwon, Samsun Sung, Sunjin Moon, Kyung-Tai Lee, Namshin Kim, Joon Ki Hong, Kyung Yeon Eo, Kang Seok Seo, Girak Kim, Sungmoo Park, Cheol-Heui Yun, Hyunil Kim, Kimyung Choi, Jiho Kim, Woon Kyu Lee, Duk-Kyung Kim, Jae-Don Oh, Eui-Soo Kim, Seoae Cho, Hak-Kyo Lee, Tae-Hun Kim, Heebal Kim. Exploring the Genetic Signature of Body Size in Yucatan Miniature Pig. 2015. PLoS ONE.
2  Jung Youn Park, Yong-Rock An, Naohisa Kanda, Chul-Min An, Hye-suk An, Jung-Ha Kang, Eun Mi Kim, Du-Hae An, Hojin Jung, Myunghee Joung, Myung Hum Park , Sook Hee Yoon, Bo-Young Lee, Taeheon Lee, Kyu-Won Kim, WonCheoul Park, DongHyun Shin, YoungSub Lee, Jaemin Kim, Woori Kwak, Hyeon Jeong Kim , Young-Jun Kwon, Sunjin Moon, Yuseob Kim, David W Burt, Seoae Cho, Heebal Kim. Cetaceans evolution: insights from the genome sequences of common minke whales. BMC Genomics. January 2015, 16:13 doi:10.1186/s12864-015-1213-1.
3  Woncheoul Park, Jaemin Kim, Hyeonjeong Kim, JaeYoung Choi, Jeong-Woong Park, Hyun-Woo Cho, Byeong-Woo Kim, Myung Hum Park, Teak-Soon Shin, Seong-Keun Cho, Jun-Kyu Park, Heebal Kim, Jae Yeon Hwang, Chang-Kyu Lee, HAK-KYO Lee, Seoae Cho, Byung-Wook Cho. Investigation of de novo unique differentially expressed genes related to evolution in exercise response during domestication in Thoroughbred race horses. 2014. PLoS ONE.
4  Simrinder Singh Sodhi, Won Cheoul Park, Mrinmoy Ghosh, Jin Nam Kim, Neelesh Sharma, Kwang Yun Shin, In Cheol Cho, Youn Chul Ryu, Sung Jong Oh, Sung Hoon Kim, Ki-Duk Song, Sang Pyo Hong, Seo Ae Cho, Hee Bal Kim, Dong Kee Jeong.Comparative transcriptomic analysis to identify differentially expressed genes in fat tissue of adult Berkshire and Jeju Native Pig using RNA-seq. Molecular Biology Reports September 2014 [LINK]
5  Hyeongmin Kim, Taeheon Lee, WonCheoul Park, Jin Woo Lee, Jaemin Kim, Bo-Young Lee, Hyeonju Ahn, Sunjin Moon,Seoae Cho, Kyoung-Tag Do, Heui-Soo Kim, Hak-Kyo Lee, Chang-Kyu Lee, Hong-Sik Kong, Young-Mok Yang, Jongsun Park, Hak-Min Kim, Byung Chul Kim, Seungwoo Hwang, Jong Bhak, Dave Burt, Kyoung-Do Park, Byung-Wook Cho, and Heebal Kim. Peeling Back the Evolutionary Layers of Molecular Mechanisms Responsive to Exercise-Stress in the Skeletal Muscle of the Racing Horse. 2013. DNA Research.
6  Hyung-jeong Lee, Mi Jang, Hyeongmin Kim, Woori Kwak, WonCheoul Park, Jae-Yeon Hwang, Chang-Kyu Lee, Gul Won Jang, Mina Park, Hyeong-Cheol Kim, Jin Young Jeong, Kang Seok Seo, Heebal Kim, Seoae Cho, Bo-Young Lee. Comparative transcriptome analysis of adipose tissues reveals that ECM-receptor interaction involved in the depot-specific adipogenesis in cattle. 2013. PLoS One.
7  Woncheoul Park, Hee-Seok Oh, Heebal Kim. Acceleration of X-chromosome gene order evolution in the cattle lineage. 2012. BMB Reports
8  Sook Hee Yoon, WonCheoul Park, Donald P. King, and Heebal Kim. Phylogenomics and molecular evolution of foot-and-mouth disease virus. 2011. Molecules and Cells
9  Kyung-Tai Lee, Mi-Jeong Byun, Kyung-Soo Kang, Eung-Woo Park, Seung-Hwan Lee, Seoae Cho, HyoYoung Kim, Kyu-Won Kim, TaeHeon Lee, Jong-Eun Park, WonCheoul Park, DongHyun Shin, Hong-Seog Park, Jin-Tae Jeon, Bong-Hwan Choi, Gul-Won Jang, Sang-Haeng Choi, Dae-Won Kim, Dajeong Lim, Hae-Suk Park, Mi-Rim Park, Jurg Ott, Lawrence B. Schook, Tae-Hun Kim & Heebal Kim. Neuronal genes for subcutaneous fat thickness in human and pig are identified by local genomic sequencing and combined SNP association study. 2010. PLoS ONE

YoungSub Lee

Title of Thesis : Estimating genetic marker effects in population-basedgenomic study using regression model. 2017. Ph.D
Current Position : Chunbuk National University, assistant research professor.
Publication
1  Young-Sup Lee, Donghyun Shin, Wonseok Lee, Mengistie Taye, Kwanghyun Cho, Kyoung-Do Park, Heebal Kim. The prediction of the expected current selection coefficient of single nucleotide polymorphism (SNP) associated with Holstein milk yield, fat and protein contents. Asian-Australasian Journal of Animal Sciences. 2015. Accepted [LINK]
2  Young-Sub Lee, Hyun-Soo Jeong, Mengistie Taye, Hyeon Jeong Kim, Youn-Chul Ryu, Seoae Cho. Genome-wide association study (GWAS) and its application for improving the genomic estimated breeding values (GEBV) of the Berkshire pork quality traits. Asian-Australasian Journal of Animal Sciences. 2015. 28(11): 1551-1557. [LINK]
3  Jung Youn Park, Yong-Rock An, Naohisa Kanda, Chul-Min An, Hye-suk An, Jung-Ha Kang, Eun Mi Kim, Du-Hae An, Hojin Jung, Myunghee Joung, Myung Hum Park , Sook Hee Yoon, Bo-Young Lee, Taeheon Lee, Kyu-Won Kim, WonCheoul Park, DongHyun Shin, YoungSub Lee, Jaemin Kim, Woori Kwak, Hyeon Jeong Kim , Young-Jun Kwon, Sunjin Moon, Yuseob Kim, David W Burt, Seoae Cho, Heebal Kim. Cetaceans evolution: insights from the genome sequences of common minke whales. BMC Genomics. January 2015, 16:13 doi:10.1186/s12864-015-1213-1. [LINK]
4  Young-Sup Lee, Jin Woo Lee, Heebal Kim. Estimating effective population size of thoroughbred horses using linkage disequilibrium and theta (4N\xa5\xec) value. 2014. livestock science [LINK]
5  Young-Sup Lee, Hyeon-Jeong Kim, Seoae Cho, Heebal Kim. The usage of SNP-SNP relationship matrix in the best linear unbiased prediction (BLUP) analysis using the community based cohort study. 2014 Genomics & Informatics 2014 Dec;12(4):254-260. English. [LINK]

Woori Kwak

Title of Thesis : Establishing strategies of genome assembly for unprecedented species. 2017. Ph.D
Current Position :
Publication
1  Soomin Jeon, Jaehoon Jung, Kwondo Kim, DongAhn Yoo, Chanho Lee, Jungsun Kang, Kyungjin Cho, Dae-Kyung Kang, Woori kwak, Sook Hee Yoon, Heebal Kim, Seoae Cho. Comparative genome analysis of Lactobacillus plantarum GB-LP3 provides candidates of survival-related genetic factors. Infection, Genetics and Evolution. 2017. [LINK]
2  Bo-Hye Nam, Woori Kwak, Young-Ok Kim, Dong-Gyun Kim, Hee Jeong Kong, Woo-Jin Kim, Jeong-Ha Kang, Jung Youn Park, Cheul Min An, Ji-Young Moon, Choul Ji Park, Jae Woong Yu, Joon Yoon, Minseok Seo, Kwondo Kim, Duk Kyung Kim, SaetByeol Lee, Samsun Sung, Chul Lee, Younhee Shin, Myunghee Jung, Byeong-Chul Kang, Shin Ga-hee, Sojeong Ka, Kelsey Caetano-Anolles, Seoae Cho, Heebal Kim. Genome sequence of pacific abalone (Haliotis discus hannai): the first draft genome in family Haliotidae. Gigascience. 2017.
3  Hyun-Seok Jin, Jeonhyun Kim, Woori Kwak, Hyeonsoo Jeong, Gyu-Bin Lim, Cha Gon Lee. Identification of a Novel Mutation in BRD4 that Causes Autosomal Dominant Syndromic Congenital Cataracts Associated with Other Neuro-Skeletal Anomalies. PLoS ONE. 2017. [LINK]
4  Gopalsamy Gnanasekaran, Eun Jung Na, Han Young Chung, Suyeon Kim, You-Tae Kim, Woori Kwak, Heebal Kim, Sangryeol Ryu, Sang Ho Choi, Ju-Hoon Lee. Genomic Insights and Its Comparative Analysis with Yersinia enterocolitica Reveals the Potential Virulence Determinants and Further Pathogenicity for Foodborne Outbreaks. J. Microbiol. Biotechnol. 2017. [LINK]
5  Jaemin Kim, Olivier Hanotte, Okeyo Ally Mwai, Tadelle Dessie, Salim Bashir, Boubacar Diallo, Morris Agaba, Kwondo Kim, Woori Kwak, Samsun Sung, Minseok Seo, Hyeonsoo Jeong, Taehyung Kwon, Mengistie Taye, Ki-Duk Song, Dajeong Lim, Seoae Cho, Hyun-Jeong Lee, Duhak Yoon, Sung Jong Oh, Stephen Kemp, Hak-Kyo Lee and Heebal Kim. The genome landscape of indigenous African cattle. Genome Biology. 2017. [LINK]
6  Sook Hee Yoon, Jaemin Kim, Donghyun Shin, Seoae Cho, Woori Kwak, Hak-Kyo Lee, Kyoung-Do Park, Heebal Kim. Complete mitochondrial genome sequences of Korean native horse from Jeju Island: Uncovering the spatio-temporal dynamics. Molecular Biology Reports. 2017. [LINK]
7  Kim Jangho, Bae Won-Gyu, Park Subeom, Kim Yeon Ju, Jo Insu, Park Sunho, Jeon Noo, Kwak Woori, Cho Seoae, Park Jooyeon, Kim Hong Nam, Choi Kyoung Soon, Seonwoo Hoon, Choung Yun-Hoon, Choung Pill-Hoon, Hong Byung, Chung Jong Hoon. Engineering Structures and Functions of Mesenchymal Stem Cells by Suspended Large-Area Graphene Nanopatterns. 2D Materials.Accepted. 2016.
8  Kyung Eun Kim, Youngae Jung, Soonki Min, Miso Nam, Rok Won Heo, Byeong Tak Jeon, Dae Hyun Song, Chin-ok Yi, Eun Ae Jeong, Hwajin Kim, Jeonghyun Kim, Seon-Yong Jeong, Woori Kwak, Do Hyun Ryu, Tamas L. Horvath, Gu Seob Roh & Geum-Sook Hwang. Caloric restriction of db/db mice reverts hepatic steatosis and body weight with divergent hepatic metabolism. Scientific Reports. 2016. [LINK]
9  Jin-Mo Sung, Mustafa Zafer Karagozlu, JeaHyun Lee, Woori Kwak & Chang-Bae Kim. The complete mitochondrial genome of Menathais tuberosa (Gastropoda, Neogastropoda, Muricidae) collected from Chuuk Lagoon. Mitochondrial DNA Part B: Resources. 2016. [LINK]
10  Mustafa Zafer Karagozlu, JinMo Sung, JeaHyun Lee, Woori Kwak, Chang-Bae Kim. Complete sequences of mitochondrial genome of Hypselodoris festiva (A. Adams, 1861) (Mollusca, Gastropoda, Nudibranchia). Mitochondrial DNA Part B: Resources. 2016. [LINK]
11  Woori Kwak, Kwondo Kim, Chul Lee, Chanho Lee, Jungsun Kang, Kyungjin Cho, Sook Hee Yoon, Dae-Kyung Kang, Heebal Kim, Jaeyoung Heo, Seoae Cho. Comparative analysis of the complete genome of Lactobacillus Plantarum GB-LP2 and potential candidate genes for host immune system enhancement. JMB. 2015. [LINK]
12  Hwajin Kim,Heeyoung Kang,Rok Won Heo,Byeong Tak Jeon,Chin-ok Yi,Hyun Joo Shin,Jeonghyun Kim,Seon-Yong Jeong,Woori Kwak,Won-Ho Kim,Sang Soo Kang,Gu Seob Roh. Caloric restriction improves diabetes-induced cognitive deficits by attenuating neurogranin-associated calcium signaling in high-fat diet-fed mice. JCBFM. 2015. [LINK]
13  Woori Kwak,Jung-Won Choi,Seong Ryul Kim,Kwang-Ho Choi,Kee-Young Kim,Tae-Won Goo,Seung-Won Park. A novel splice variant of the decapentaplegic (dpp) gene in the wild silkworm, Bombyx mandarina. BBRC. 2015. [LINK]
14  Hyeonsoo Jeong, Ki-Duk Song, Minseok Seo, Kelsey Caetano-Anolles, Jaemin Kim, Woori Kwak, Jae-don Oh, EuiSoo Kim, Dong Kee Jeong, Seoae Cho, Heebal Kim, Hak-Kyo Lee. Exploring evidence of positive selection reveals genetic basis of meat quality traits in Berkshire pigs through whole genome sequencing. BMC Genetics 2015. [LINK]
15  Jae Yeon Hwang, Gwi-Deuk Jin, Jongbin Park, Heebal Kim, Chang-Kyu Lee, Woori Kwak, Bo-Hye Nam, Cheul Min An, Jung Youn Park, Kyu-Hyun Park, Chul-Sung Huh, Eun Bae Kim. Complete genome sequence and SNPs of Raja pulchra (Rajiformes, Rajidae) mitochondria. Mitochondrial DNA. 2015. [LINK]
16  Eun-Jung Lee, Jun Won Kim, Hyun Yoo, Woori Kwak, Won Hoon Choi, Seoae Cho, Yu Jeong choi, Yoon-Jin Lee, Jaeho Cho, M.D., Ph.D. Single high-dose irradiation aggravates eosinophil-mediated fibrosis through IL-33 secreted from impaired vessels in the skin compared to fractionated irradiation. 2015. Biochemical and Biophysical Research Communications.
17  Hyeongmin Kim, Ki-Duk Song, Hyeon Jeong Kim, WonCheoul Park, Jaemin Kim, Taeheon Lee, Dong-Hyun Shin, Woori Kwak, Young-jun Kwon, Samsun Sung, Sunjin Moon, Kyung-Tai Lee, Namshin Kim, Joon Ki Hong, Kyung Yeon Eo, Kang Seok Seo, Girak Kim, Sungmoo Park, Cheol-Heui Yun, Hyunil Kim, Kimyung Choi, Jiho Kim, Woon Kyu Lee, Duk-Kyung Kim, Jae-Don Oh, Eui-Soo Kim, Seoae Cho, Hak-Kyo Lee, Tae-Hun Kim, Heebal Kim. Exploring the Genetic Signature of Body Size in Yucatan Miniature Pig. 2015. PLoS ONE.
18  Moon Sunjin, Kim Tae-Hun, Lee Kyung-Tai, Kwak Woori, Lee Taeheon, Lee Si-Woo, Kim Myung-Jick, Cho Kyuho, Kim Namshin, Chung Won-Hyong, Sung Samsun, Park Taesung, Cho Seoae, Groenen Martien, Nielsen Rasmus, Kim Yuseob, Kim Heebal. A genome-wide scan for signatures of directional selection in domesticated pigs. 2015. BMC Genomics. [LINK]
19  Jung Youn Park, Yong-Rock An, Naohisa Kanda, Chul-Min An, Hye-suk An, Jung-Ha Kang, Eun Mi Kim, Du-Hae An, Hojin Jung, Myunghee Joung, Myung Hum Park , Sook Hee Yoon, Bo-Young Lee, Taeheon Lee, Kyu-Won Kim, WonCheoul Park, DongHyun Shin, YoungSub Lee, Jaemin Kim, Woori Kwak, Hyeon Jeong Kim , Young-Jun Kwon, Sunjin Moon, Yuseob Kim, David W Burt, Seoae Cho, Heebal Kim. Cetaceans evolution: insights from the genome sequences of common minke whales. BMC Genomics. January 2015, 16:13 doi:10.1186/s12864-015-1213-1.
20  Joon-Ho Lee, Taeheon Lee, Hak-Kyo Lee, Byung-Wook Cho, Dong-Hyun Shin, Kyoung-Tag Do, Samsun Sung, Woori Kwak, Hyeon Jeong Kim, Heebal Kim, Seoae Cho, Kyung-Do Park.Thoroug hbred Horse Single Nucleotide Polymorphism and Expression Database: HSDB Asian Australas. J. Anim. Sci. Published 2014 August 20 [LINK]
21  Kwondo Kim, Woori Kwak, Sam-Sun Sung, Seoae Cho, Heebal Kim, Duhak Yoon and Hyun-Jeong Lee. A Novel Genetic Variant Database for Korean Native Cattle (Hanwoo): HanwooGDB. 2014. Genes & Genomics. Accepted.
22  Woori Kwak, Jin-nam Kim, Daewon Kim, Jin Su Hong, Jae Hark Jeong, Heebal Kim, Seoae Cho, Yoo Yong Kim. Genome-wide DNA Methylation Profiles of Small Intestine and Liver in Fast-growing and Slow-growing Weaning Piglets. Asian Australas. J. Anim. Sci. 2014 November 27(11):1532-1539 [LINK]
23  Sooyeon Lim, Dong-Hoon Lee, Woori Kwak, Hakdong Shin, Hye-Jin Ku, Jong-eun Lee, Gun Eui Lee, Heebal Kim, Sang-Ho Choi, Sangryeol Ryu, Ju-Hoon Lee.Comparative Genomic Analysis of Staphylococcus aureus FORC_001 and S. aureus MRSA252 Reveal the Characteristi cs of Antibiotic Resistance and Virulence Factors for Human Infection. J. Microbiol. Biotechnol. 2014 October 23 DOI : 10.4014/jmb.1410.10005 [LINK]
24  Woori Kwak, Ki-Duk Song, Jae-Don Oh, Kang-Nyeong Heo, Jun-Heon Lee, Woon Kyu Lee, Sook Hee Yoon, Heebal Kim, Seoae Cho and Hak-Kyo Lee. Uncovering genomic features and maternal origin of Korean Native Chicken by whole genome sequencing. Plos One 2014. Accepted.
25  Hyun-Jeong Lee, Jaemin Kim, Taeheon Lee, Jun Kyu Son, Ho-Baek Yoon, Kwang-Soo Baek, Jin Young Jeong, Yong-Min Cho, Kyung-Tai Lee, Byoung-Chul Yang, Kwanghyeon Cho, Tae-Hun Kim, Eung Gi Kwon, Jungrye Nam, Woori Kwak, Seoae Cho, Heebal Kim. Deciphering the genetic blueprint behind Holstein milk proteins and production. 2014. Genome Biology and Evolution. Accepted
26  Jun Sang Ham, Woori Kwak, Oun Ki Chang, Gi Sung Han, Seok Geun Jeong, Kuk Hwan Seol, Hyoun Wook Kim, Geun Ho Kang, Beom Young Park, Hyun-Jeong Lee, Samsun Sung, Taeheon Lee, Seoae Cho, Heebal Kim. De novo assembly and comparative analysis of the Enterococcus faecalis genome (KACC91532) from a Korean neonate. 2013. Journal of Microbiology and Biotechnology.
27  Hyung-jeong Lee, Mi Jang, Hyeongmin Kim, Woori Kwak, WonCheoul Park, Jae-Yeon Hwang, Chang-Kyu Lee, Gul Won Jang, Mina Park, Hyeong-Cheol Kim, Jin Young Jeong, Kang Seok Seo, Heebal Kim, Seoae Cho, Bo-Young Lee. Comparative transcriptome analysis of adipose tissues reveals that ECM-receptor interaction involved in the depot-specific adipogenesis in cattle. 2013. PLoS One.