Heebal Kim's Laboratory

Ph.D Candidate

Hyeonju Ahn

  • B.Sc in Animal Science and Biotechnology, Seoul National University, Korea
  • M.Sc in Animal Science and Biotechnology, Seoul National University, Korea
  • Ph.D Course
Publication
  1. Woori Kwak, Young-Hyun Han, Donghyeok Seol, Hyaekang Kim, Hyeonju Ahn, Misun Jeong, Jaeku Kang, Heebal Kim and Tae Hyun Kim. Complete Genome of Lactobacillus iners KY Using Flongle Provides Insight Into the Genetic Background of Optimal Adaption to Vaginal Econiche. Frontiers in Microbiology. 2020. DOI: 10.3389/fmicb.2020.01048 [LINK]
  2. Sook Hee Yoon, Wonseok Lee, Hyeonju Ahn, Kelsey Caetano-Anolles, Kyoung-Do Park, Heebal Kim. Origin and spread of Thoroughbred racehorses inferred from complete mitochondrial genome sequences: Phylogenomic and Bayesian coalescent perspectives. PLoS One. 2018. [LINK]
  3. Hyeonju Ahn,Chul Lee,Bo-Hye Nam, Eun Bae Kim, Kelsey Caetano-Anolles,Heebal Kim. Selective pressure on the protein-coding genes of the pufferfish is correlated with phenotypic traits. Marine Genomics. 2018. [LINK]
  4. Sojeong Ka, Hyeonju Ahn, Minseok Seo, Heebal Kim, Jin Nam Kim, Hyun-Jeong Lee. Status of dosage compensation of X chromosome in bovine genome. 2016 Genetica. [LINK]
  5. Hyeonju Ahn, Kyu-Won Kim, Hyeon Jeong Kim, Seoae Cho, and Heebal Kim. Differential Evolution between Monotocous and Polytocous Species. 2014. Asian-Australasian Journal of Animal Sciences. 27(4):464
  6. Hyeongmin Kim, Taeheon Lee, WonCheoul Park, Jin Woo Lee, Jaemin Kim, Bo-Young Lee, Hyeonju Ahn, Sunjin Moon,Seoae Cho, Kyoung-Tag Do, Heui-Soo Kim, Hak-Kyo Lee, Chang-Kyu Lee, Hong-Sik Kong, Young-Mok Yang, Jongsun Park, Hak-Min Kim, Byung Chul Kim, Seungwoo Hwang, Jong Bhak, Dave Burt, Kyoung-Do Park, Byung-Wook Cho, and Heebal Kim. Peeling Back the Evolutionary Layers of Molecular Mechanisms Responsive to Exercise-Stress in the Skeletal Muscle of the Racing Horse. 2013. DNA Research.
  7. Martien A. M. Groenen,Alan L. Archibald, Hirohide Uenishi, Christopher K. Tuggle, Yasuhiro Takeuchi, Max F. Rothschild, Claire Rogel-Gaillard, Chankyu Park, Denis Milan, Hendrik-Jan Megens, Shengting Li, Denis M. Larkin, Heebal Kim, Laurent A. F. Frantz, Mario Caccamo, Hyeonju Ahn, Bronwen L. Aken, Anna Anselmo, Christian Anthon, Loretta Auvil, Bouabid Badaoui, Craig W. Beattie, Christian Bendixen, Daniel Berman, Frank Blecha, Jonas Blomberg, Lars Bolund, Mirte Bosse, Sara Botti, Zhan Bujie, Megan Bystrom, Boris Capitanu, Denise Carvalho-Silva, Patrick Chardon, Celine Chen, Ryan Cheng, Sang-Haeng Choi, William Chow, Richard C. Clark, Christopher Clee, Richard P. M. A. Crooijmans, Harry D. Dawson, Patrice Dehais, Fioravante De Sapio, Bert Dibbits, Nizar Drou, Zhi-Qiang Du, Kellye Eversole, Joao Fadista, Susan Fairley, Thomas Faraut, Geoffrey J. Faulkner, Katie E. Fowler, Merete Fredholm, Eric Fritz, James G. R. Gilbert, Elisabetta Giuffra, Jan Gorodkin, Darren K. Griffin, Jennifer L. Harrow, Alexander Hayward, Kerstin Howe, Zhi-Liang Hu, Sean J. Humphray, Toby Hunt, Henrik Hornsh\xa9\xaaj, Jin-Tae Jeon, Patric Jern, Matthew Jones, Jerzy Jurka, Hiroyuki Kanamori, Ronan Kapetanovic, Jaebum Kim, Jae-Hwan Kim, Kyu-Won Kim, Tae-Hun Kim, Greger Larson, Kyooyeol Lee, Kyung-Tai Lee, Richard Leggett, Harris A. Lewin, Yingrui Li, Wansheng Liu, Jane E. Loveland, Yao Lu, Joan K. Lunney, Jian Ma, Ole Madsen, Katherine Mann, Lucy Matthews, Stuart McLaren, Takeya Morozumi, Michael P. Murtaugh, Jitendra Narayan, Dinh Truong Nguyen, Peixiang Ni, Song-Jung Oh, Suneel Onteru, Frank Panitz, Eung-Woo Park, Hong-Seog Park, Geraldine Pascal, Yogesh Paudel, Miguel Perez-Enciso, Ricardo Ramirez-Gonzalez, James M. Reecy, Sandra Rodriguez-Zas, Gary A. Rohrer, Lauretta Rund, Yongming Sang, Kyle Schachtschneider, Joshua G. Schraiber, John Schwartz, Linda Scobie, Carol Scott, Stephen Searle, Bertrand Servin, Bruce R. Southey, Goran Sperber, Peter Stadler, Jonathan V. Sweedler, Hakim Tafer, Bo Thomsen, Rashmi Wali, Jian Wang, Jun Wang, Simon White, Xun Xu, Martine Yerle, Guojie Zhang, Jianguo Zhang, Jie Zhang, Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. Analyses of pig genomes provide insight into porcine demography and evolution. 2012. Nature doi:10.1038/nature11622

Chul Lee
 
  • B.Sc in Bioscience and Biotechnology, Hankuk University of Foreign Study, Korea
  • Ph.D Course
Publication
  1. Arang Rhie, Shane A. McCarthy, Olivier Fedrigo, Joana Damas, Giulio Formenti, Sergey Koren, Marcela Uliano-Silva, William Chow, Arkarachai Fungtammasan, Gregory L. Gedman, Lindsey J. Cantin, Francoise Thibaud-Nissen, Leanne Haggerty, Chul Lee, Byung June Ko, Juwan Kim, Iliana Bista, Michelle Smith, Bettina Haase, Jacquelyn Mountcastle, Sylke Winkler, Sadye Paez, Jason Howard, Sonja C. Vernes, Tanya M. Lama, Frank Grutzner, Wesley C. Warren, Christopher Balakrishnan, Dave Burt, Julia M. George, Mathew Biegler, David Iorns, Andrew Digby, Daryl Eason, Taylor Edwards, Mark Wilkinson, George Turner, Axel Meyer, Andreas F. Kautt, Paolo Franchini, H William Detrich III, Hannes Svardal, Maximilian Wagner, Gavin J.P. Naylor, Martin Pippel, Milan Malinsky, Mark Mooney, Maria Simbirsky, Brett T. Hannigan, Trevor Pesout, Marlys Houck, Ann Misuraca, Sarah B. Kingan, Richard Hall, Zev Kronenberg, Jonas Korlach, Ivan Sović, Christopher Dunn, Zemin Ning, Alex Hastie, Joyce Lee, Siddarth Selvaraj, Richard E. Green, Nicholas H. Putnam, Jay Ghurye, Erik Garrison, Ying Sims, Joanna Collins, Sarah Pelan, James Torrance, Alan Tracey, Jonathan Wood, Dengfeng Guan, Sarah E. London, David F. Clayton, Claudio V. Mello, Samantha R. Friedrich, Peter V. Lovell, Ekaterina Osipova, Farooq O. Al-Ajli, Simona Secomandi, Heebal Kim, Constantina Theofanopoulou, Yang Zhou, Robert S. Harris, Kateryna D. Makova, Paul Medvedev, Jinna Hoffman, Patrick Masterson, Karen Clark, Fergal Martin, Kevin Howe, Paul Flicek, Brian P. Walenz, Woori Kwak, Hiram Clawson, Mark Diekhans, Luis Nassar, Benedict Paten, Robert H.S. Kraus, Harris Lewin, Andrew J. Crawford, M. Thomas P. Gilbert, Guojie Zhang, Byrappa Venkatesh, Robert W. Murphy, Klaus-Peter Koepfli, Beth Shapiro, Warren E. Johnson, Federica Di Palma, Tomas Margues-Bonet, Emma C. Teeling, Tandy Warnow, Jennifer Marshall Graves, Oliver A. Ryder, David Hausler, Stephen J. O’Brien, Kerstin Howe, Eugene W. Myers, Richard Durbin, Adam M. Phillippy, Erich D. Jarvis. Towards complete and error-free genome assemblies of all vertebrate species.
    bioRxiv. 2020. DOI: https://doi.org/10.1101/2020.05.22.110833 [LINK]
  2. Hyeonju Ahn,Chul Lee,Bo-Hye Nam, Eun Bae Kim, Kelsey Caetano-Anolles,Heebal Kim. Selective pressure on the protein-coding genes of the pufferfish is correlated with phenotypic traits. Marine Genomics. 2018. [LINK]
  3. Chul Lee, Heesu Jeong, DongAhn Yoo,Eun Bae Kim,Bo-Hye Nam,Heebal Kim. Coelacanth-specific adaptive genes give insights into primitive evolution for water-to-land transition of tetrapods. Marine Genomics. 2018. [LINK]
  4. Wonseok Lee, Donghyn Shin, Mengistie Taye, Chul Lee, Heebal Kim, Hak-Kyo Lee, Kyung-Do Park. Analysis of cross-population differentiation between Thoroughbred and Jeju horses.Asian-Australas J Anim Sci. 2017. [LINK]
  5. Donghyun Shin, Chul Lee, Kyoung-Do Park, Heebal Kim, Kwang-hyeon Cho. Genome-association analysis of Korean Holstein milk traits using genomic estimated breeding value. Asian-Australasian Journal of Animal Sciences. 2017. [LINK]
  6. Bo-Hye Nam, Woori Kwak, Young-Ok Kim, Dong-Gyun Kim, Hee Jeong Kong, Woo-Jin Kim, Jeong-Ha Kang, Jung Youn Park, Cheul Min An, Ji-Young Moon, Choul Ji Park, Jae Woong Yu, Joon Yoon, Minseok Seo, Kwondo Kim, Duk Kyung Kim, SaetByeol Lee, Samsun Sung, Chul Lee, Younhee Shin, Myunghee Jung, Byeong-Chul Kang, Shin Ga-hee, Sojeong Ka, Kelsey Caetano-Anolles, Seoae Cho, Heebal Kim. Genome sequence of pacific abalone (Haliotis discus hannai): the first draft genome in family Haliotidae. Gigascience. 2017.
  7. Woori Kwak, Kwondo Kim, Chul Lee, Chanho Lee, Jungsun Kang, Kyungjin Cho, Sook Hee Yoon, Dae-Kyung Kang, Heebal Kim, Jaeyoung Heo, Seoae Cho. Comparative analysis of the complete genome of Lactobacillus Plantarum GB-LP2 and potential candidate genes for host immune system enhancement. JMB. 2015. [LINK]
  8. Guojie Zhang,Cai Li, Qiye Li, Bo Li, Denis M. Larkin, Chul Lee, Jay F. Storz, Agostinho Antunes, Matthew J. Greenwold, Robert W. Meredith, Anders Odeen, Jie Cui, Qi Zhou, Luohao Xu, Hailin Pan, Zongji Wang, Lijun Jin, Pei Zhang, Haofu Hu, Wei Yang, Jiang Hu, Jin Xiao, Zhikai Yang, Yang Liu, Qiaolin Xie, Hao Yu, Jinmin Lian, Ping Wen, Fang Zhang, Hui Li, Yongli Zeng, Zijun Xiong, Shiping Liu, Long Zhou, Zhiyong Huang, Na An, Jie Wang, Qiumei Zheng, Yingqi Xiong, Guangbiao Wang, Bo Wang, Jingjing Wang, Yu Fan, Rute R. da Fonseca, Alonzo Alfaro-Nunez, Mikkel Schubert, Ludovic Orlando, Tobias Mourier, Jason T. Howard, Ganeshkumar Ganapathy, Andreas Pfenning, OsceolaWhitney, Miriam V. Rivas, Erina Hara, Julia Smith, Marta Farre, Jitendra Narayan, Gancho Slavov, Michael N Romanov, Rui Borges, Joao Paulo Machado, Imran Khan, Mark S. Springer, John Gatesy, Federico G. Hoffmann, Juan C. Opazo, Olle Hastad, Roger H. Sawyer, Heebal Kim, Kyu-Won Kim, Hyeon Jeong Kim, Seoae Cho, Ning Li, Yinhua Huang, Michael W. Bruford, Xiangjiang Zhan, Andrew Dixon, Mads F. Bertelsen, Elizabeth Derryberry, Wesley Warren, Richard K Wilson, Shengbin Li, David A. Ray, Richard E. Green, Stephen J. O\xa1\xafBrien, Darren Griffin, Warren E. Johnson, David Haussler, Oliver A. Ryder, Eske Willerslev, Gary R. Graves, Per Alstrom, Jon Fjeldsa, David P. Mindell, Scott V. Edwards, Edward L. Braun, Carsten Rahbek, David W. Burt, Peter Houde, Yong Zhang, Huanming Yang, Jian Wang, Avian Genome Consortium,\xa1\xd7 Erich D. Jarvis, M. Thomas P. Gilbert, JunWang Comparative genomics reveals insights into avian genome evolution and adaptation Science 2014 DOI: 10.1126/science.1251385 [Link]

Sojin Ahn

  • B.Sc in Bioscience and Biotechnology, Hankuk University of Foreign Study, Korea
  • Ph.D course
Publication
1  Jihyun Yu, Sojin Ahn, Kwondo Kim, Kelsey Caetano-Anolles, Chanho Lee, Jungsun Kang, Kyungjin Cho, Sook Hee Yoon, Dae-Kyung Kang, Heebal Kim. Comparative genome analysis of Lactobacillus plantarum GB-LP1 isolated from traditional Korean fermented food. Journal of Microbiology and Biotechnology. 2017. [LINK]
2  Hyun-Jin Koo, Sojin Ahn, Han Young Chung, Suyeon Kim, Kwondo Kim, Sangryeol Ryu, Ju-Hoon Lee, Sang Ho Choi and Heebal Kim. Comparative genomic analysis reveals genetic features related to the virulence of Bacillus cereus FORC_013. Gut Pathogens. 2017. [LINK]
3  Wonseok Lee, Sojin Ahn, Mengistie Taye, Samsun Sung, Hyun-Jeong Lee, Seoae Cho, and Heebal Kim. Detecting Positive Selection of Korean Native Goat Populations Using Next-Generation Sequencing. 2016. Molecules and Cells. [LINK]
4  Sojin Ahn, Han Young Chung, Sooyeon Lim, Kwondo Kim, Suyeon Kim, Eun Jung Na, Kelsey Caet ano-Anolles, Ju-Hoon Lee, Sangryeol Ryu, Sang Ho Choi and Heebal Kim. Complete genome of Vibrio parahaemolyticus F ORC014 isolated from the toothfish. 2016. Gut Pathogens. [LINK]

Hyaekang Kim
  
  • B.Sc in Biology, University of Wisconsin, Madison, USA
  • M.Sc/Ph.D course
Publication
1  Hyaekang Kim, Taehyun Kim, Jaeku Kang, Younghoon Kim, Heebal Kim Is Lactobacillus Gram-Positive? A Case Study of Lactobacillus iners. Microorganisms. 2020.
DOI: 10.3390/microorganisms8070969 [LINK]
2  Woori Kwak, Young-Hyun Han, Donghyeok Seol, Hyaekang Kim, Hyeonju Ahn, Misun Jeong, Jaeku Kang, Heebal Kim and Tae Hyun Kim. Complete Genome of Lactobacillus iners KY Using Flongle Provides Insight Into the Genetic Background of Optimal Adaption to Vaginal Econiche. Frontiers in Microbiology. 2020.
DOI:10.3389/fmicb.2020.01048 [LINK]
3  Accurate and Strict Identification of Probiotic Species Based on Coverage of Whole-metagenome Shotgun Sequencing Data. Frontiers in Microbiology. 2019. DOI:10.3389/fmicb.2019.01683. [LINK]
4  Seong-Ryul Kim, Woori Kwak, Hyaekang Kim, Kelsey Caetano-Anolles, Kee-Young Kim, Su-Bae Kim, Kwang-Ho Choi, Seong-Wan Kim, Jae-Sam Hwang, Minjee Kim, Iksoo Kim, Tae-Won Goo, Seung-Won Park. Genome sequence of the Japanese oak silk moth, Antheraea yamamai: the first draft genome in the family Saturniidae. GigaScience. 2019. [LINK]
5  Minyu Song, Hyaekang Kim, Woori Kwak, Won Seo Park, Jayeon Yoo, Han Byul Kang, Jin-Hyoung Kim, Sun-Moon Kang, Hoa Van Ba, Bu-Min Kim, Mi-Hwa Oh, Heebal Kim, Jun-Sang Ham.Expression and purification of ESBP in Escherichia coli, the extracellular protein derived from Bifidobacterium longum KACC 91563. Food Science of Animal Resources. 2019. [LINK]
6  Donghyeok Seol, Soyun Jhang, Hyaekang Kim, Se-Young Kim, HyoSun Kwak, Soon-Han Kim, Woojung Lee, Sewook Park, Heebal Kim, Seoae Cho, and Woori Kwak. Accurate and Strict Identification of Probiotic Species Based on Coverage of Whole-metagenome Shotgun Sequencing Data. Frontiers in Microbiology. 2019. [LINK]
7  Hyaekang Kim,Woori Kwak, Sook Hee Yoon, Dae-Kyung Kang, Heebal Kim. Horizontal gene transfer of Chlamydia: Novel insights from tree reconciliation. PLoS ONE. 2018. [LINK]
8  DongAhn Yoo, Kwondo Kim, Hyaekang Kim, Seoae Cho, Jin Nam Kim, Dajeong Lim, Seog-Gyu Cho, Bong-Hwan Cho & Heebal Kim. The Genetic Origin of Short Tail in Endangered Korean Dog, DongGyeongi. Scientific Reports. 2017. [LINK]

Soomin Jeon
  
  • B.Sc in Systems Biotechnology, Konkuk University, Korea
  • M.Sc/Ph.D course
Publication
1  Soomin Jeon, Jaehoon Jung, Kwondo Kim, DongAhn Yoo, Chanho Lee, Jungsun Kang, Kyungjin Cho, Dae-Kyung Kang, Woori kwak, Sook Hee Yoon, Heebal Kim, Seoae Cho. Comparative genome analysis of Lactobacillus plantarum GB-LP3 provides candidates of survival-related genetic factors. Infection, Genetics and Evolution. 2017. [LINK]

DongAhn Yoo

  • B.Eng in Biochemical Engineering University College London, UK
  • M.Sc/Ph.D course
Publication
  1. Bonggyu Min, Dongahn Yoo,Youngho Lee, Minseok Seo and Heebal Kim. Complete genomic analysis of Enterococcus faecium heat-resistant strain developed by Two-step Adaptation Laboratory Evolution method. Frontiers in Bioengineering and Biotechnology. 2020. DOI: 10.3389/fbioe.2020.00828 [LINK]
  2. Kwondo Kim, Sohyun Bang, DongAhn Yoo, Heebal Kim, Shunsuke Suzuki. De novo emergence and potential function of human-specific tandem repeats in brainrelated loci. Human genetics.2019. DOI :https://doi.org/10.1007/s00439-019-02017-5 [LINK]
  3. Sohyun Bang, DongAhn Yoo, Soo-Jin Kim, So Yun Jhang, Seoae Cho, and Heebal Kim. Establishment and evaluation of prediction model for multiple disease classification based on gut microbial data. Scientific Reports.2019. [LINK]
  4. Bo-Hye Nam, DongAhn Yoo, Young-Ok Kim, Jung Youn Park, Younhee Shin, Ga-hee Shin, Chan-Il Park, Heebal Kim, and Woori Kwak. Whole genome sequencing reveals the impact of recent artificial selection on red sea bream reared in fish farms. Scientific Reports.2019. [LINK]
  5. Jaehoon Jung, Kwondo Kim, DongAhn Yoo, Chanho Lee, Jungsun Kang, Kyungjin Cho, Dae-Kyung Kang, Woori Kwak, Sook Hee Yoon, Hawsun Sohn, Heebal Kim, Seoae Cho. Comparative genomic analysis of Lactobacillus plantarum GB-LP4 and identification of evolutionarily divergent genes in high-osmolarity environment. Genes & Genomics. 2018. [LINK]
  6. Kwondo Kim, Jaehoon Jung, Kelsey Caetano-Anollés, Samsun Sung, DongAhn Yoo, Bong-Hwan Choi, Hyung-Chul Kim, Jin-Young Jeong, Yong-Min Cho, Eung-Woo Park, Tae-Jeong Choi, Byoungho Park, Dajeong Lim, Heebal Kim. Artificial selection increased body weight but induced increase of runs of homozygosity in Hanwoo cattle. PLoS ONE. 2018. [LINK]
  7. Chul Lee, Heesu Jeong, DongAhn Yoo,Eun Bae Kim,Bo-Hye Nam,Heebal Kim. Coelacanth-specific adaptive genes give insights into primitive evolution for water-to-land transition of tetrapods. Marine Genomics. 2018. [LINK]
  8. DongAhn Yoo, Kwondo Kim, Hyaekang Kim, Seoae Cho, Jin Nam Kim, Dajeong Lim, Seog-Gyu Cho, Bong-Hwan Cho & Heebal Kim. The Genetic Origin of Short Tail in Endangered Korean Dog, DongGyeongi. Scientific Reports. 2017. [LINK]
  9. DongAhn Yoo, Bernadette B. Bagon, Valerie Diane V. Valeriano, Ju Kyoung Oh, Heebal Kim, Seoae Cho, Dae-Kyung Kang. Complete Genome Analysis of Lactobacillus fermentum SK152 from Kimchi Reveals Genes Associated with its Antimicrobial Activity. FEMS Microbiology Letters. 2017. [LINK]
  10. Soomin Jeon, Jaehoon Jung, Kwondo Kim, DongAhn Yoo, Chanho Lee, Jungsun Kang, Kyungjin Cho, Dae-Kyung Kang, Woori kwak, Sook Hee Yoon, Heebal Kim, Seoae Cho. Comparative genome analysis of Lactobacillus plantarum GB-LP3 provides candidates of survival-related genetic factors. Infection, Genetics and Evolution. 2017. [LINK]

ByungJune Ko
  
  • B.Sc in Forest resources, Kongju National University, Korea
  • M.Sc in Forest resources, Kongju National University, Korea
  • Ph.D course
Publication
  1. Arang Rhie, Shane A. McCarthy, Olivier Fedrigo, Joana Damas, Giulio Formenti, Sergey Koren, Marcela Uliano-Silva, William Chow, Arkarachai Fungtammasan, Gregory L. Gedman, Lindsey J. Cantin, Francoise Thibaud-Nissen, Leanne Haggerty, Chul Lee, Byung June Ko, Juwan Kim, Iliana Bista, Michelle Smith, Bettina Haase, Jacquelyn Mountcastle, Sylke Winkler, Sadye Paez, Jason Howard, Sonja C. Vernes, Tanya M. Lama, Frank Grutzner, Wesley C. Warren, Christopher Balakrishnan, Dave Burt, Julia M. George, Mathew Biegler, David Iorns, Andrew Digby, Daryl Eason, Taylor Edwards, Mark Wilkinson, George Turner, Axel Meyer, Andreas F. Kautt, Paolo Franchini, H William Detrich III, Hannes Svardal, Maximilian Wagner, Gavin J.P. Naylor, Martin Pippel, Milan Malinsky, Mark Mooney, Maria Simbirsky, Brett T. Hannigan, Trevor Pesout, Marlys Houck, Ann Misuraca, Sarah B. Kingan, Richard Hall, Zev Kronenberg, Jonas Korlach, Ivan Sović, Christopher Dunn, Zemin Ning, Alex Hastie, Joyce Lee, Siddarth Selvaraj, Richard E. Green, Nicholas H. Putnam, Jay Ghurye, Erik Garrison, Ying Sims, Joanna Collins, Sarah Pelan, James Torrance, Alan Tracey, Jonathan Wood, Dengfeng Guan, Sarah E. London, David F. Clayton, Claudio V. Mello, Samantha R. Friedrich, Peter V. Lovell, Ekaterina Osipova, Farooq O. Al-Ajli, Simona Secomandi, Heebal Kim, Constantina Theofanopoulou, Yang Zhou, Robert S. Harris, Kateryna D. Makova, Paul Medvedev, Jinna Hoffman, Patrick Masterson, Karen Clark, Fergal Martin, Kevin Howe, Paul Flicek, Brian P. Walenz, Woori Kwak, Hiram Clawson, Mark Diekhans, Luis Nassar, Benedict Paten, Robert H.S. Kraus, Harris Lewin, Andrew J. Crawford, M. Thomas P. Gilbert, Guojie Zhang, Byrappa Venkatesh, Robert W. Murphy, Klaus-Peter Koepfli, Beth Shapiro, Warren E. Johnson, Federica Di Palma, Tomas Margues-Bonet, Emma C. Teeling, Tandy Warnow, Jennifer Marshall Graves, Oliver A. Ryder, David Hausler, Stephen J. O’Brien, Kerstin Howe, Eugene W. Myers, Richard Durbin, Adam M. Phillippy, Erich D. Jarvis. Towards complete and error-free genome assemblies of all vertebrate species.
    bioRxiv. 2020. DOI: https://doi.org/10.1101/2020.05.22.110833 [LINK]
  2. Donghyeok Seol, Byung June Ko, Bongsang Kim, Han-Ha Chai , Dajeong Lim and Heebal Kim. Identification of Copy Number Variation in Domestic Chicken Using Whole-Genome Sequencing Reveals Evidence of Selection in the Genome. Animals. 2019. DOI:10.3390/ani9100809. [LINK]
  3. Byung June Ko, Junghwa An, Hong Seomun, Mu-Yeong Lee, Soo Hyung Eo. Microsatellite DNA analysis reveals lower than expected genetic diversity in the threatened leopard cat (Prionailurus bengalensis) in South Korea. Genes & genomics. 2018. [LINK]
  4. Soo Hyung Eo, Byung June Ko, Byeong-Ju Lee, Hong Seomun, Soonok Kim, Mun-Jeong Kim, Jeong Ho Kim, Junghwa An. A set of microsatellite markers for population genetics of leopard cat (Prionailurus bengalensis) and cross-species amplification in other felids. Biochemical systematics and ecology. 2016. [LINK]
  5. Soo Hyung Eo, Woo-Shin Lee, Byeong-Ju Lee, Byung June Ko, Jong U. Kim, Jong Hoon Jeon. Microsatellite markers for the Ussuri white-toothed shrew (Soricidae: Crocidura lasiura) developed by Ion Torrent sequencing and their application to the shrew populations in disturbed forests. Genes & Genomics. 2015. [LINK]

Jisung Jang
  
  • B.Sc in Animal Science and Biotechnology, Seoul National University, Korea
  • B.B.A in Entrepreneurship, Seoul National University, Korea
  • M.Sc/Ph.D course
Publication
  1. Bo-Hye Nam, Jisung Jang, Kelsey Caetano-Anolles, Young-Ok Kim, Jung Youn Park, Hawsun Sohn, Sook Hee Yoon, Heebal Kim, Woori Kwak. Microbial community and functions associated with digestion of algal polysaccharides in the visceral tract of Haliotis discus hannai: Insights from metagenome and metatranscriptome analysis. PLoS One. 2018. [LINK]
  2. Jisung Jang, Sook Hee Yoon, Wonseok Lee, Jihyun Yu, Joon Yoon, Seunghyun Shim, Heebal Kim. Time-calibrated phylogenomics of the porcine epidemic diarrhea virus: genome-wide insights into the spatio-temporal dynamics. Genes & Genomics. 2018. [LINK]

Heesu Jeong
  
  • B.Sc in Biology and Computer Science, Seoul National University, Korea
  • M.Sc/Ph.D course
Publication
  1. Jin A. Kim, Donghwan Shim, Shipra Kumari, Ha-eun Jung, Ki-Hong Jung, Heesu Jeong, Woe-Yeon Kim, Soo In Lee and Mi-Jeong Jeong. Transcriptome Analysis of Diurnal Gene Expression in Chinese Cabbage. Genes. 2019. [LINK]
  2. Chul Lee, Heesu Jeong, DongAhn Yoo,Eun Bae Kim,Bo-Hye Nam,Heebal Kim. Coelacanth-specific adaptive genes give insights into primitive evolution for water-to-land transition of tetrapods. Marine Genomics. 2018. [LINK]

Sohyoung Won
  
  • M.Sc in Animal Science and Biotechnology, Seoul National University, Korea
  • Ph.D course
Publication
  1. Swati Srivastava, Krishnamoorthy Srikanth, Sohyoung Won, Ju-Hwan Son, Jong-Eun Park, Woncheoul Park, Han-Ha Chai, Dajeong Lim. Haplotype-based genome wide association study and identification of candidate genes associated with carcass traits in Hanwoo cattle. Genes. 2020.
  2. Sohyoung Won, Jong-Eun Park, Ju-Hwan Son, Seung-Hwan Lee, Byeong Ho Park, Mina Park, Won-Chul Park, Han-Ha Chai, Heebal Kim, Jungjae Lee and Dajeong Lim. Genomic Prediction Accuracy Using Haplotypes Defined by Size and Hierarchical Clustering based on Linkage Disequilibrium. Frontiers in Genetics. 2020. DOI: 10.3389/fgene.2020.00134 [LINK]
  3. Sohyoung Won, Jaehoon Jung, Eungwoo Park, Heebal Kim.Identification of genes related to intramuscular fat content of pigs using genome-wide association study.AJAS. 2017. [LINK]

Donghyeok Seol
  
  • B.Sc in Animal Science and Biotechnology, Seoul National University, Korea
  • M.Sc/Ph.D course
Publication
  1. Woori Kwak, Young-Hyun Han, Donghyeok Seol, Hyaekang Kim, Hyeonju Ahn, Misun Jeong, Jaeku Kang, Heebal Kim and Tae Hyun Kim. Complete Genome of Lactobacillus iners KY Using Flongle Provides Insight Into the Genetic Background of Optimal Adaption to Vaginal Econiche. Frontiers in Microbiology. 2020. DOI: 10.3389/fmicb.2020.01048 [LINK]
  2. Donghyeok Seol, Byung June Ko, Bongsang Kim , Han-Ha Chai , Dajeong Lim and Heebal Kim. Identification of Copy Number Variation in Domestic Chicken Using Whole-Genome Sequencing Reveals Evidence of Selection in the Genome. Animals. 2019. DOI:10.3390/ani9100809. [LINK]
  3. Donghyeok Seol, Soyun Jhang, Hyaekang Kim, Se-Young Kim, HyoSun Kwak, Soon-Han Kim, Woojung Lee, Sewook Park, Heebal Kim, Seoae Cho, and Woori Kwak. Accurate and Strict Identification of Probiotic Species Based on Coverage of Whole-metagenome Shotgun Sequencing Data. Frontiers in Microbiology. 2019. [LINK]



BongSang Kim
  
  • B.Sc in Bioscience and Bioinformtics, Soongsil University, Korea
  • M.Sc/Ph.D course
Publication
  1. Donghyeok Seol, Byung June Ko, Bongsang Kim , Han-Ha Chai , Dajeong Lim and Heebal Kim. Identification of Copy Number Variation in Domestic Chicken Using Whole-Genome Sequencing Reveals Evidence of Selection in the Genome. Animals. 2019. DOI:10.3390/ani9100809. [LINK]

Youngho Lee
  
  • B.Sc in Psychology and Economics, University of Illinois at Urbana-Champaign
  • M.Sc in Neuroscience, King's College London
Publication
  1. Bonggyu Min, Dongahn Yoo,Youngho Lee, Minseok Seo and Heebal Kim. Complete genomic analysis of Enterococcus faecium heat-resistant strain developed by Two-step Adaptation Laboratory Evolution method. Frontiers in Bioengineering and Biotechnology. 2020. DOI: 10.3389/fbioe.2020.00828 [LINK]

SoYun Jhang

  • B.Sc in Animal Physiology and Biology, University of Toronto, Canada
  • M.Sc/Ph.D course
Publication
  1. Donghyeok Seol, Soyun Jhang, Hyaekang Kim, Se-Young Kim, HyoSun Kwak, Soon-Han Kim, Woojung Lee, Sewook Park, Heebal Kim, Seoae Cho, and Woori Kwak. Accurate and Strict Identification of Probiotic Species Based on Coverage of Whole-metagenome Shotgun Sequencing Data. Frontiers in Microbiology. 2019. [LINK]


  2. Sohyun Bang, DongAhn Yoo, Soo-Jin Kim, So Yun Jhang, Seoae Cho, and Heebal Kim. Establishment and evaluation of prediction model for multiple disease classification based on gut microbial data. Scientific Reports.2019. [LINK]

Youngwook Kim

  • B.Sc in Horticultural Science and Biotechnology, Seoul National University, Korea
  • M.Sc/Ph.D course
Publication

Li Vladimir

  • B.Sc in Biologal Science, Nazarbayev University, Kazakhstan, Astana
  • M.Sc in Biology, Seoul National University
Publication
  1. Bonggyu Min, Kkotnim Kim, Vladimir Li, Seoae Cho and Heebal Kim. Changes in cell membrane fatty acid composition of Streptococcus thermophilus in response to gradually increasing heat temperature. Journal of Microbiology and Biotechnology. 2020. DOI: 10.4014/jmb.1912.12053 [LINK]


Jinchul Cho

  • B.Sc in Biotechnology, Catholic University of Korea
  • M.Sc in Biotechnology, Catholic University of Korea
Publication

Nguyen Thi Truc Ly

  • B.Sc. in Chemistry Education, Quy Nhon University, Vietnam
  • M.Sc. in Chemistry, Sookmyung Women’s University, Korea
Publication