Selected Publication

  1. Bo-Hye Nam, Woori Kwak, Young-Ok Kim, Dong-Gyun Kim, Hee Jeong Kong, Woo-Jin Kim, Jeong-Ha Kang, Jung Youn Park, Cheul Min An, Ji-Young Moon, Choul Ji Park, Jae Woong Yu, Joon Yoon, Minseok Seo, Kwondo Kim, Duk Kyung Kim, SaetByeol Lee, Samsun Sung, Chul Lee, Younhee Shin, Myunghee Jung, Byeong-Chul Kang, Shin Ga-hee, Sojeong Ka, Kelsey Caetano-Anolles, Seoae Cho, Heebal Kim. Genome sequence of pacific abalone (Haliotis discus hannai): the first draft genome in family Haliotidae. Gigascience. 2017. DOI: https://doi.org/10.1093/gigascience/gix014.


  2. Jaemin Kim, Olivier Hanotte, Okeyo Ally Mwai, Tadelle Dessie, Salim Bashir, Boubacar Diallo, Morris Agaba, Kwondo Kim, Woori Kwak, Samsun Sung, Minseok Seo, Hyeonsoo Jeong, Taehyung Kwon, Mengistie Taye, Ki-Duk Song, Dajeong Lim, Seoae Cho, Hyun-Jeong Lee, Duhak Yoon, Sung Jong Oh, Stephen Kemp, Hak-Kyo Lee and Heebal Kim. The genome landscape of indigenous African cattle. Genome Biology. 2017. DOI: 10.1186/s13059-017-1153-y. [LINK]


  3. Jaeyoung Heo, Minseok Seo, Hwanhee Park, Woon Kyu Lee, Le Luo Guan, Joon Yoon, Kelsey Caetano-Anolles, Hyeonju Ahn, Se-Young Kim, Yoon-Mo Kang, Seoae Cho & Heebal Kim. Gut microbiota Modulated by Probiotics and Garcinia cambogia Extract Correlate with Weight Gain and Adipocyte Sizes in High Fat-Fed Mice. Scientific Reports. 2016. DOI : 10.1038/srep33566. [LINK]


  4. Hyeonsoo Jeong, Kwondo Kim, Kelsey Caetano-Anolles, Heebal Kim, Byung-ki Kim, Jun-Koo Yi, Jae-Jung Ha, Seoae Cho & Dong Yep Oh. Whole genome sequencing of Gye ongbuk Araucana, a newly developed blue-egg laying chicken breed, reveals its origin and genetic characteristics. Scientific Reports. 2016. DOI:10.1038/srep26484 [LINK]


  5. Jung Youn Park, Yong-Rock An, Chul-Min An, Jung-Ha Kang, Eun Mi Kim, Heebal Kim, Seoae Cho & Jaemin Kim. Evolutionary constraints over microsatellite abundance in larger mammals as a potential mechanism against carcinogenic burden. Scientific Reports. 2016. DOI:10.1038/srep25246 [LINK]


  6. Minseok Seo, Kwondo Kim, Joon Yoon, Jin Young Jeong, Hyun-Jeong Lee, Seoae Cho & Heebal Kim. RNA-seq analysis for detecting quantitative trait-associated genes. Scientific Reports. 2016. DOI:10.1038/srep24375 [LINK]


  7. Minseok Seo, Kelsey Caetano-Anolles, Sandra Rodriguez-Zas, Sojeong Ka, Jin Young Jeong, Sungkwon Park, Min Ji Kim, Whan-Gook Nho, Seoae Cho, Heebal Kim, and Hyun-Jeong Lee. Comprehensive identification of sexually dimorphic genes in diverse cattle tissues using RNA-seq. BMC Genomics. 2016, DOI: 10.1186/s12864-016-2400-4 [LINK]


  8. Hyeonsoo Jeong, Samsun Sung, Taehyung Kwon, Minseok Seo, Kelsey Caetano-Anolles, Sang Ho Choi, Seoae Cho, Arshan Nasir, and Heebal Kim. HGTree: database of ho rizontally transferred genes determined by tree reconciliation. Nucleic Acids Research. 2016, doi: 10.1093/nar/gkv1245 [LINK]


  9. Leif Andersson, Alan L Archibald, Cynthia D Bottema, Rudiger Brauning, Shane C Burgess, Dave W Burt, Eduardo Casas, Hans H Cheng, Laura Clarke, Christine Couldrey, Brian P Dalrymp le, Christine G Elsik, Sylvain Foissac, Elisabetta Giuffra, Martien A Groenen, Ben J Hayes, LuSheng S Huang, Hassan Khatib, James W Kijas, Heebal Kim, Joan K Lunney, Fiona M McCarthy, John C McEwan, Stephen Moore, Bindu Nanduri, Cedric Notredame, Yniv Palti, Grah am S Plastow, James M Reecy, Gary A Rohrer, Elena Sarropoulou, Carl J Schmidt, Jeffrey Silv erstein, Ross L Tellam, Michele Tixier-Boichard, Gwenola Tosser-Klopp, Christopher K Tuggle, Johanna Vilkki, Stephen N White, Shuhong Zhao, Huaijun Zhou and The FAANG Consortium. Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project. Genome Biology 2015, doi:10.1186/s13059-015-0622-4 [LINK]


  10. Sunjin Moon, Tae-Hun Kim, Kyung-Tai Lee, Woori Kwak, Taeheon Lee, Si-Woo Lee, Myung-Jick Kim, Kyuho Cho, Namshin Kim, Won-Hyong Chung, Samsun Sung, Taesung Park, Seoae Cho, Martien AM Groenen, Rasmus Nielsen, Yuseob Kim and Heebal Kim. A genome-wide scan for signatures of directional selection in domesticated pigs. BMC Genomics 2015, 16:130 doi:10.1186/s12864-015-1330-x [LINK]


  11. Jung Youn Park, Yong-Rock An, Naohisa Kanda, Chul-Min An, Hye Suck An, Jung-Ha Kang, Eun Mi Kim, Du-Hae An, Hojin Jung, Myunghee Joung, Myung Hum Park, Sook Hee Yoon, Bo-Young Lee, Taeheon Lee, Kyu-Won Kim, Won Cheoul Park, Dong Hyun Shin, Young Sub Lee, Jaemin Kim, Woori Kwak, Hyeon Jeong Kim, Young-Jun Kwon, Sunjin Moon, Yuseob Kim, David W Burt, Seoae Cho and Heebal Kim. Cetaceans evolution: insights from the genome sequences of common minke whales. BMC Genomics January 2015, 16:13 doi:10.1186/s12864-015-1213-1 [LINK]


  12. Guojie Zhang,Cai Li, Qiye Li, Bo Li, Denis M. Larkin, Chul Lee, Jay F. Storz, Agostinho Antunes, Matthew J. Greenwold, Robert W. Meredith, Anders Odeen, Jie Cui, Qi Zhou, Luohao Xu, Hailin Pan, Zongji Wang, Lijun Jin, Pei Zhang, Haofu Hu, Wei Yang, Jiang Hu, Jin Xiao, Zhikai Yang, Yang Liu, Qiaolin Xie, Hao Yu, Jinmin Lian, Ping Wen, Fang Zhang, Hui Li, Yongli Zeng, Zijun Xiong, Shiping Liu, Long Zhou, Zhiyong Huang, Na An, Jie Wang, Qiumei Zheng, Yingqi Xiong, Guangbiao Wang, Bo Wang, Jingjing Wang, Yu Fan, Rute R. da Fonseca, Alonzo Alfaro-Nunez, Mikkel Schubert, Ludovic Orlando, Tobias Mourier, Jason T. Howard, Ganeshkumar Ganapathy, Andreas Pfenning, OsceolaWhitney, Miriam V. Rivas, Erina Hara, Julia Smith, Marta Farre, Jitendra Narayan, Gancho Slavov, Michael N Romanov, Rui Borges, Joao Paulo Machado, Imran Khan, Mark S. Springer, John Gatesy, Federico G. Hoffmann, Juan C. Opazo, Olle Hastad, Roger H. Sawyer, Heebal Kim, Kyu-Won Kim, Hyeon Jeong Kim, Seoae Cho, Ning Li, Yinhua Huang, Michael W. Bruford, Xiangjiang Zhan, Andrew Dixon, Mads F. Bertelsen, Elizabeth Derryberry, Wesley Warren, Richard K Wilson, Shengbin Li, David A. Ray, Richard E. Green, Stephen J. O\xa1\xafBrien, Darren Griffin, Warren E. Johnson, David Haussler, Oliver A. Ryder, Eske Willerslev, Gary R. Graves, Per Alstrom, Jon Fjeldsa, David P. Mindell, Scott V. Edwards, Edward L. Braun, Carsten Rahbek, David W. Burt, Peter Houde, Yong Zhang, Huanming Yang, Jian Wang, Avian Genome Consortium,\xa1\xd7 Erich D. Jarvis, M. Thomas P. Gilbert, JunWang Comparative genomics reveals insights into avian genome evolution and adaptation Science 2014 DOI: 10.1126/science.1251385 [Link]


  13. Hyun-Jeong Lee, Jaemin Kim, Taeheon Lee, Jun Kyu Son, Ho-Baek Yoon, Kwang-Soo Baek, Jin Young Jeong, Yong-Min Cho, Kyung-Tai Lee, Byoung-Chul Yang, Kwanghyeon Cho, Tae-Hun Kim, Eung Gi Kwon, Jungrye Nam, Woori Kwak, Seoae Cho, Heebal Kim. Deciphering the genetic blueprint behind Holstein milk proteins and production. 2014. Genome Biology and Evolution doi: 10.1093/gbe/evu102 [LINK]

  14. Dong-Hyun Shin, Hyun-Jeong Lee, Seoae Cho, Hyeon Jeong Kim, Jae Yeon Hwang, Chang-Kyu Lee, JinYoung Jeong, Duhak Yoon, Heebal Kim. Deleted copy number variation of Hanwoo and Holstein using next generation sequencing at the population level. 2014. BMC Genomics. doi:10.1186/1471-2164-15-240 [LINK]


  15. Yinhua Huang, Yingrui Li, David W Burt, Hualan Chen, Yong Zhang, Wubin Qian, Heebal Kim, Shangquan Gan, Yiqiang Zhao, Jianwen Li, Kang Yi, Huapeng Feng, Pengyang Zhu, Bo Li, Qiuyue Liu, Suan Fairley, Katharine E Magor, Zhenlin Du, Xiaoxiang Hu, Laurie Goodman, Hakim Tafer, Alain Vignal, Taeheon Lee, Kyu-Won Kim, Zheya Sheng, Yang An, Steve Searle, Javier Herrero, Martien A M Groenen, ..., Frederique Pitel, Jun Wang & Ning Li. The duck genome and transcriptome provide insight into an avian influenza virus reservoir species. 2013. Nature Genetics. doi:10.1038/ng.2657 [LINK]


  16. Hyeongmin Kim, Taeheon Lee, WonCheoul Park, Jin Woo Lee, Jaemin Kim, Bo-Young Lee, Hyeonju Ahn, Sunjin Moon, Seoae Cho, Kyoung-Tag Do, Heui-Soo Kim, Hak-Kyo Lee, Chang-Kyu Lee, Hong-Sik Kong, Young-Mok Yang, Jongsun Park, Hak-Min Kim, Byung Chul Kim, Seungwoo Hwang, Jong Bhak, Dave Burt, Kyoung-Do Park, Byung-Wook Cho, and Heebal Kim. Peeling Back the Evolutionary Layers of Molecular Mechanisms Responsive to Exercise-Stress in the Skeletal Muscle of the Racing Horse. 2013. DNA Research. doi:10.1093/dnares/dst010 [LINK]


  17. Jian Yang, Taeheon Lee, Jaemin Kim, Myeong-Chan Cho, Bok-Ghee Han, Jong-Young Lee, Hyun-Jeong Lee, Seoae Cho and Heebal Kim. Ubiquitous polygenicity of human complex traits: genome-wide analysis of 49 traits in Koreans. 2013. PLoS Genetics. Vol.9:No.3:e1003355 [LINK]


  18. Jaemin Kim, Taeheon Lee, Tae-Hun Kim, Kyung-Tai Lee, Heebal Kim. An integrated approach of comparative genomics and heritability analysis of pig and human on obesity trait: evidence for candidate genes on human chromosome 2. 2012. BMC Genomics. 19;13(1):711 [LINK]


  19. Martien A. M. Groenen, Alan L. Archibald, Hirohide Uenishi, Christopher K. Tuggle, Yasuhiro Takeuchi, Max F. Rothschild, Claire Rogel-Gaillard, Chankyu Park, Denis Milan, Hendrik-Jan Megens, Shengting Li, Denis M. Larkin, Heebal Kim, Laurent A. F. Frantz, Mario Caccamo, Hyeonju Ahn, Bronwen L. Aken, Anna Anselmo, Christian Anthon, ..., Jae-Hwan Kim, Kyu-Won Kim, Tae-Hun Kim, Greger Larson, Kyooyeol Lee, Kyung-Tai Lee, ..., Jianguo Zhang, Jie Zhang, Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. Analyses of pig genomes provide insight into porcine demography and evolution. 2012. Nature doi:10.1038/nature11622 [LINK]


  20. Bo-Young Lee, Dong Hyun Shin, Seoae Cho, Kang-Seok Seo, and Heebal Kim. Genome-wide analysis of copy number variations reveals that ageing processes influence body fat distribution in Korea Associated Resource (KARE) cohorts. 2012. Human Genetics. 131:1795-1804. [LINK]


  21. Rami A. Dalloul, Julie A. Long, Aleksey V. Zimin, Luqman Aslam, Kathryn Beal, Le Ann Blomberg, ..., Andrew Jiang, Pieter de Jong, Pete Kaiser, Heebal Kim, Kyu-Won Kim, Sungwon Kim, David Langenberger, Mi-Kyung Lee, Taeheon Lee, Shrinivasrao Mane, Guillaume Marcais, Manja Marz, Audrey P. McElroy, Thero Modise, Mikhail Nefedov, Cedric Notredame, Ian R. Paton, ..., Curtis P. Van Tassell, Albert J. Vilella, Kelly P. Williams, James A. Yorke, Liqing Zhang, Hong-Bin Zhang, Xiaojun Zhang, Yang Zhang, Kent M. Reed. Multi-platform Next Generation Sequencing of the Domestic Turkey (Meleagris gallopavo): Genome Assembly and Analysis. 2010. PLoS Biology Sep 7;8(9) [LINK]


  22. Kyung Mo Kim, Samsun Sung, Gustavo Caetano-Anolls, Jae Yong Han, Heebal Kim. An Approach of Orthology Detection from Homologous Sequences under Minimum Evolution. 2008. Nucleic Acid Research 36:17:e110 [LINK]


  23. Namshin Kim, Dajeong Lim, Sanghyuk Lee and Heebal Kim. ASePCR: Alternative splicing electronic RT-PCR in multiple tissues and organs. 2005. Nucleic Acids Research 33(Web Server issue):W681-5 [LINK]


  24. Heebal Kim, Robert Klein, Jacek Majewski & Jurg Ott. Estimating rates of alternative splicing in mammals and invertebrates. 2004. Nature Genetics 36:915-16 [LINK]