2015

  1. HyoYoung Kim, Kelsey Caetano-Anolles, Minseok Seo, Young-jun Kwon, Seoae Cho, Kangseok Seo, and Heebal Kim. Prediction of Genes Related to Positive Selectio n Using Whole-Genome Resequencing in Three Commercial Pig Breeds. Genomics Inform. 2015, DOI:10.5808/GI.2015.13.4.137 [LINK]


  2. Woori Kwak, Kwondo Kim, Chul Lee, Chanho Lee, Jungsun Kang, Kyungjin Cho, Sook Hee Yoon, Dae-Kyung Kang, Heebal Kim, Jaeyoung Heo, Seoae Cho. Comparative analysis of the complete genome of Lactobacillus Plantarum GB-LP2 and potential candidate genes for host immune system enhancement. JMB. 2015, DOI: 10.4014/jmb.1510.10081 [LINK]


  3. Mingoo Kim, Heewon Seo, Yohan Choi, Inkyu Yoo, Minseok Seo, Chang-Kyu Lee, Heebal Kim, Hakhyun Ka. Analysis of Stage-Specific Gene Expression Profiles in the Uterine Endometrium during Pregnancy in Pigs. PLoS ONE. 2015, DOI: 10.1371/journal.pone.0143436 [LINK]


  4. Kelsey Caetano-Anolles, Minseok Seo, Sandra Rodriguez-Zas, Jae-Don Oh, Jae Yong Han, Kichoon Lee, Tae Sub Park, Sangsu Shin, Zhang Jiao Jiao, Mrinmoy Ghosh, Dong Kee Jeong, Seoae Cho, Heebal Kim, Ki-Duk Song, Hak-Kyo Lee. Comprehensive Identification of Sexual Dimorphism-Associated Differentially Expressed Genes in Two-Way Factorial Designed RNA-Seq Data on Japanese Quail (Coturnix coturnix japonica). PLoS ONE. 2015, DOI: 10.1371/journal.pone.0139324 [LINK]


  5. Kwondo Kim, Minseok Seo, Hyunsung Kang, Seoae Cho, Heebal Kim, Kang-Seok Seo. Application of LogitBoost Classifier for Traceability Using SNP Chip Data. PLoS ONE. 2015, DOI: 10.1371/journal.pone.0139685 [LINK]


  6. Bo-Young Lee, Kwang-Nyeong Lee, Taeheon Lee, Jong-Hyeon Park, Su-Mi Kim, Hyang-Sim Lee, Dong-Su Chung, Hang-Sub Shim, Hak-Kyo Lee, Heebal Kim. Bovine Genome-wide Association Study for Genetic Elements to Resist the Infection of Foot-and-mouth Disease in the Field. AJAS 2015, 28(2): 166-170 [LINK]


  7. Sunjin Moon, Jin Woo Lee, Donghyun Shin, Kwang-Yun Shin, Jun Kim, Ik-Young Choi, Jaemin Kim, Heebal Kim. A Genome-wide Scan for Selective Sweeps in Racing Horses.AJAS 2015, 1525-1531 doi: 10.5713/ajas.14.0696 [Link]


  8. Kwang-Hyun Cho, Jae-Don Oh, Hee-bal Kim, Kyung-Do Park, Joon-Ho Lee. Genome Wide Association Studies Using Multiple-lactation Breeding Value in Holsteins.AJAS 2015, 28(3): 328-333 [LINK]


  9. Hyeonsoo Jeong, Ki-Duk Song, Minseok Seo, Kelsey Caetano-Anolles, Jaemin Kim, Woori Kwak, Jae-don Oh, EuiSoo Kim, Dong Kee Jeong, Seoae Cho, Heebal Kim, Hak-Kyo Lee. Exploring evidence of positive selection reveals genetic basis of meat quality traits in Berkshire pigs through whole genome sequencing. BMC Genetics 2015, doi:10.1186/s12863-015-0265-1 [LINK]


  10. Sooyeon Lim, SooHyun Cho, Kelsey Caetano-Anolles, Seok Geun Jeong, Mi Hwa Oh, Beom Young Park, Hyun Jung Kim, Seoae Cho, Sang Ho Choi, Sangryeol Ryu, Ju-Hoon Lee, Heebal Kim, Jun Sang Ham. Developmental Dynamic Analysis of the Excreted Microbiome of Chickens Using Next-Generation Sequencing. Journal of Molecular Microbiology and Biotechnology 2015, 25:262-268 DOI: 10.1159/000430865 [LINK]


  11. Jae Yeon Hwang, Gwi-Deuk Jin, Jongbin Park, Heebal Kim, Chang-Kyu Lee, Woori Kwak, Bo-Hye Nam, Cheul Min An, Jung Youn Park, Kyu-Hyun Park, Chul-Sung Huh, Eun Bae Kim. Complete genome sequence and SNPs of Raja pulchra (Rajiformes, Rajidae) mitochondria. Mitochondrial DNA 2015, DOI: 10.3109/19401736.2015.1060467 [LINK]


  12. Dong-Hyun Shin, Jin Woo Lee, Jong-Eun Park, Ik-Young Choi, Hee-Seok Oh, Hyeon Jeong Kim, Heebal Kim. Multiple Genes Related to Muscle Identified through a Joint Analysis of a Two-stage Genome-wide Association Study for Racing Performance of 1,156 Thoroughb reds. Asian-Australasian Journal of Animal Sciences 2015, 28(6): 771-781 [LINK]


  13. Leif Andersson, Alan L Archibald, Cynthia D Bottema, Rudiger Brauning, Shane C Burgess, Dave W Burt, Eduardo Casas, Hans H Cheng, Laura Clarke, Christine Couldrey, Brian P Dalrymple, Christine G Elsik, Sylvain Foissac, Elisabetta Giuffra, Martien A Groenen, Ben J Hayes, LuSheng S Huang, Hassan Khatib, James W Kijas, Heebal Kim, Joan K Lunney, Fiona M McCarthy, John C McEwan, Stephen Moore, Bindu Nanduri, Cedric Notredame, Yniv Palti, Graham S Plastow, James M Reecy, Gary A Rohrer, Elena Sarropoulou, Carl J Schmidt, Jeffrey Silv erstein, Ross L Tellam, Michele Tixier-Boichard, Gwenola Tosser-Klopp, Christopher K Tuggle, Johanna Vilkki, Stephen N White, Shuhong Zhao, Huaijun Zhou and The FAANG Consortium. Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project. Genome Biology 2015, doi:10.1186/s13059-015-0622-4 [LINK]


  14. Taehyung Kwon, Sook Hee Yoon, Kyu-Won Kim, Kelsey Caetano-Anolles, Seoae Cho, Heebal Kim. Time-calibrated phylogenomics of the classical swine fever viruses: genome-wide Bayesian coalescent approach. PLoS ONE 2015,10(3): e0121578. doi:10.1371/journal.pone.0121578 [LINK]


  15. Hyeongmin Kim, Ki-Duk Song, Hyeon Jeong Kim, WonCheoul Park, Jaemin Kim, Taeheon Lee, Dong-Hyun Shin, Woori Kwak, Young-jun Kwon, Samsun Sung, Sunjin Moon, Kyung-Tai Lee, Namshin Kim, Joon Ki Hong, Kyung Yeon Eo, Kang Seok Seo, Girak Kim, Sungmoo Park, Cheol-Heui Yun, Hyunil Kim, Kimyung Choi, Jiho Kim, Woon Kyu Lee, Duk-Kyung Kim, Jae-Don Oh, Eui-Soo Kim, Seoae Cho, Hak-Kyo Lee, Tae-Hun Kim, Heebal Kim. Exploring the Genetic Signature of Body Size in Yucatan Miniature Pig. PLoS ONE 2015, 10(4):e0121732. DOI: 10.1371/journal.pone.0121732 [LINK]


  16. Sunjin Moon, Tae-Hun Kim, Kyung-Tai Lee, Woori Kwak, Taeheon Lee, Si-Woo Lee, Myung-Jick Kim, Kyuho Cho, Namshin Kim, Won-Hyong Chung, Samsun Sung, Taesung Park, Seoae Cho, Martien AM Groenen, Rasmus Nielsen, Yuseob Kim and Heebal Kim. A genome-wide scan for signatures of directional selection in domesticated pigs. BMC Genomics 2015, 16:130 doi:10.1186/s12864-015-1330-x [LINK]


  17. Jonghoon Lee, Nur Kholilatul Izzah, Murukarthick Jayakodi, Sampath Perumal, Ho Jun Joh, Hyeon Ju Lee, Sang-Choon Lee, Jee Young Park, Ki-Woung Yang, Il-Sup Nou, Joodeok Seo, Jaeheung Yoo, Youngdeok Suh, Kyounggu Ahn, Ji Hyun Lee,Gyung Ja Choi, Yeisoo Yu, Heebal Kim and Tae-Jin Yang. Genome-wide SNP identification and QTL mapping for black rot resistance in cabbage. BMC Plant Biology 2015, 15:32 doi:10.1186/s12870-015-0424-6 [LINK]


  18. Jung Youn Park, Yong-Rock An, Naohisa Kanda, Chul-Min An, Hye Suck An, Jung-Ha Kang, Eun Mi Kim, Du-Hae An, Hojin Jung, Myunghee Joung, Myung Hum Park, Sook Hee Yoon, Bo-Young Lee, Taeheon Lee, Kyu-Won Kim, Won Cheoul Park, Dong Hyun Shin, Young Sub Lee, Jaemin Kim, Woori Kwak, Hyeon Jeong Kim, Young-Jun Kwon, Sunjin Moon, Yuseob Kim, David W Burt, Seoae Cho and Heebal Kim. Cetaceans evolution: insights from the genome sequences of common minke whales. BMC Genomics January 2015, 16:13 doi:10.1186/s12864-015-1213-1 [LINK]


  19. Jaemin Kim, Seoae Cho, Kelsey Caetano-Anolles, Heebal Kim and Youn-Chul Ryu. Genome-wide detection and characterization of positive selection in Korean Native Black Pig from Jeju Island. BMC Genetics January 2015, 16:3 doi:10.1186/s12863-014-0160-1 [LINK]


  20. Kwondo Kim, Woori Kwak, Sam-Sun Sung, Seoae Cho, Heebal Kim, Duhak Yoon and Hyun-Jeong Lee. A Novel Genetic Variant Database for Korean Native Cattle (Hanwoo ): HanwooGDB. 2015. Genes & Genomics. [ LINK ]