By Species


  Chicken
Publication
1  Woori Kwak, Ki-Duk Song, Jae-Don Oh, Kang-Nyeong Heo, Jun-Heon Lee, Woon Kyu Lee, Sook Hee Yoon, Heebal Kim, Seoae Cho and Hak-Kyo Lee. Uncovering genomic features and maternal origin of Korean Native Chicken by whole genome sequencing. 2014. Plos One Accepted
2  Mi Na Park, Jin Ae Choi, Kyung-Tai Lee, Hyun-Jeong Lee, Bong-Hwan Choi, Heebal Kim, Tae-Hun Kim, Seoae Cho, Taeheon Lee. Genome-wide Association Study of Chicken Plumage Pigmentation. 2013. Asian-Australasian Journal of Animal Sciences. 26(11):1523-1528
3  Han BK, Jung JG, Nam J, Moon JK, Kim JN, Lee SI, Kim JK, Kim H, Han JY. Identification of the Major Proteins Produced by Cultured Germline Stem Cell in Chicken. 2009. J Androl. 30:690-702
4  Sang In Lee, Woon Kyu Lee, Ji Hye Shin, Beom Ku Han, Sunjin Moon, Seoae Cho, Taesung Park, Heebal Kim, and Jae Yong Han. Sexually dimorphic gene expression in the chick brain before gonadal differentiation. 2009. Poultry Science 88:1003-1015
5  Sang Su Shin, Tae Min Kim, Sun Young Kim, Tae Wan Kim, Hee Won Seo, Seul Ki Lee, Se Chang Kwon, Gwan Sun Lee, Heebal Kim, Jeong Mook Lim, and Jae Yong Han. Generation of transgenic quail through germ cell-mediated germline transmission. 2008. FASEB Journal 2435-2444
6  Deivendran Rengaraj, Duk Kyung Kim, Ying Hui Zheng, Sang In Lee, Heebal Kim, Jae Yong Han. Testis-specific novel transcripts in chicken: In situ localization and expression pattern profiling during sexual development. 2008. Biology of Reproduction 79:413-420
7  HyoYoung Kim, Sunjin Moon and Heebal Kim. Functional Prediction of Imprinted Genes in Chicken Based on a Mammalian Comparative Expression Network. 2008. Genomics & Informatics 6(1) 32-35
8  Jee Young Lee, Jeong Mook Lim, Duk Kyung Kim, Ying Hui Zheng, Sunjin Moon, Beom Ku Han, Ki DuK Song, Heebal Kim and Jae Yong Han. Identification and Gene Expression Profiling of the Pum1 and Pum2 Members of the Pumilio Family in the Chicken. 2008. Molecular Reproduction and Development 75:184-190
9  Bo R Lee, Heebal Kim, Tae S Park, Sunjin Moon, Seoae Cho, Taesung Park, Jeong M Lim and Jae Y Han A set of stage-specific gene transcripts identified in EK stage X and HH stage 3 chick embryos. 2007. BMC Developmental Biology 7:60
10  Heebal Kim, Tae Sub Park, Woon Kyu Lee, Sunjin Moon, Jin Nam Kim, Ji Hye Shin, Jin Gyoung Jung, Seon Duk Lee, Sang Hyun Park, Kyung Je Park, Mi A Kim, Sang Su Shin, Tae Min Kim, Jungrye Nam, Yeonkyung Kang, Jeong Mook Lim, Jae Yong Han. MPSS profiling of embryonic gonad and primordial germ cells in chicken. 2007. Physiological Genomics 11;29(3):253-9
11  Jin Won Choi, Eun Young Lee, Ji Hye Shin, Yinghui Zheng, Byung Wook Cho, Jin-Kyoo Kim, Heebal Kim, And Jae Yong Han. Identification of breed-Specific DNA Polymorphisms for A Simple and Unambiguous Screening System in Germline Chimeric Chickens. 2007. Journal of experimental zoology 307A:241-248
12  Hakhyun Ka, Heewon Seo, Mingoo Kim, Sunjin Moon, Heebal Kim and Chang-Kyu Lee. Gene Expression Profiling of the Uterus with Embryos Cloned by Somatic Cell Nuclear Transfer on Day 30 of Pregnancy. 2007. Animal Reproduction Science 108:79-91
13  Heebal Kim, Dajeong Lim, Beom Ku Han, Samsun Sung, Mina Jeon, Sunjin Moon, Yeonkyung Kang, Jungrye Nam and Jae Yong Han. ChickGCE: A novel germ cell EST database for studying the early developmental stage in chickens. 2006. Genomics 252-257
14  J. H. Shin, H. Kim, D. Lim, M. Jeon, B. K. Han, T. S. Park, J. K. Kim, H. S. Lillehoj, B. W. Cho and J. Y. Han. Analysis of chicken embryonic gonad ESTs. 2006. Animal Genetics 37(1):85-6
15  Beom Ku Han, Jin Nam Kim, Ji Hye Shin, Jin-Kyoo Kim, Do Hyun Jo, Heebal Kim, and Jae Yong Han. Proteome Analysis of Chicken Embryonic Gonads: Identification of Major Proteins from Cultured Gonadal Primordial Germ Cells. 2005. Molecular Reproduction and Development 72:521-529
16  JY Han, KD Song, JH Shin, BK Han, TS Park, HJ Park, JK Kim, HS Lillehoj, and H Kim. Identification and Characterization of the Peroxiredoxin Gene Family in Chickens. 2005. Poultry Science 84:1432-1438
17  J.H.Shin, H.Kim, K.D.Song, B.K.Han, T.S.Park, D.K.Kim, J.Y.Han. 2005. A set of testis-specific novel genes collected from a collection of Korean Native Chicken ESTs. Animal Genetics 36:346-348
18  Namshin Kim, Dajeong Lim, Sanghyuk Lee and Heebal Kim. ASePCR: Alternative splicing electronic RT-PCR in multiple tissues and organs. 2005. Nucleic Acids Research 33:681-685
19  Duk Kyung Kim, Dajeong Lim, Bo Ram Lee, Ji Hye Shin, Heebal Kim and Jae Young Han. Analysis of testis-specific transcripts in the chicken. 2005. Animal Genetics 36:232-234
20  Kim, H., C.J. Schmidt, K.S. Decker and M.G. Emara. A double-screening method to identify reliable candidate non-synonymous SNPs from chicken EST data. 2003. Animal Genetics 34:249-54.
21  Emara, M.G. and H. Kim. Genetic markers and their Application in Poultry Breeding. 2003. Poultry Science 82:952-7
22  Emara, M.G., H. Kim, R.R. Lapierre, N. Lakshmanan, J. Zhu, D.L. Pollock, M. Sadjadi, and H.S. Lillehoj. Genetic diversity at the major histocompatibility complex and microsatellite loci in three commercial broiler pure lines. 2002. Poultry Science 81:1609-17.
23  Emara, M.G., M.A., Abdellatif, D.L. Pollock, M. Sadjadi, S.S. Cloud, C.R. Pope, J.K. Rosenberger, and H. Kim. Genetic variation in susceptibility to Marek's disease in a commercial broiler population. 2001. Avian Diseases 45:400-409.

  Human
Publication
1  Young-Sup Lee, Hyeon-Jeong Kim, Seoae Cho, Heebal Kim. The usage of SNP-SNP relationship matrix in the best linear unbiased prediction (BLUP) analysis using the community based cohort study. 2014. Genomics & Informatics 2014 Dec;12(4):254-260. English
2  Sung Wook Hwang, Nayoung Kim, Hye-Kyung Jung, Ji Hyun Park, Yoon Jin Choi, Heebal Kim, Jaemin Kim, Joo Sung Kim, and Hyun Chae Jung. The association of SLC6A4 5-HTTLPR and TRPV1 945G>C with functional dyspepsia in Korea. 2014. Journal of Gastroenterology and Hepatology. DOI: 10.1111/jgh.12596
3  HyoYoung Kim, Won Gi Yoo, Junhyung Park, Heebal Kim, Byeong-Chul Kang. Semantic modeling for SNPs associated with ethnic disparities in HapMap samples. 2014. Genomics& Informatics.12(1):35-41
4  Jaemin Kim, Taeheon Lee, Hyun-Jeong Lee, Heebal Kim. Genotype-environment interactions for quantitative traits in Korea Associated Resource (KARE) cohorts. 2014. BMC Genetics. doi:10.1186/1471-2156-15-18
5  Jun Sang Ham, Woori Kwak, Oun Ki Chang, Gi Sung Han, Seok Geun Jeong, Kuk Hwan Seol, Hyoun Wook Kim, Geun Ho Kang, Beom Young Park, Hyun-Jeong Lee, Samsun Sung, Taeheon Lee, Seoae Cho, Heebal Kim. De novo assembly and comparative analysis of the Enterococcus faecalis genome (KACC91532) from a Korean neonate. 2013. Journal of Microbiology and Biotechnology. 23(7): 966-973
6  Hyo-Young Kim, Jun-Hyung Park, Heebal Kim, and Byeong-Chul Kang. Semantic networks for genome-wide CNV associated with AST and ALT in Korean cohorts. 2013. Molecular & Cellular Toxicology. 9(2): 103-111
7  Jian Yang, Taeheon Lee, Jaemin Kim, Myeong-Chan Cho, Bok-Ghee Han, Jong-Young Lee, Hyun-Jeong Lee, Seoae Cho and Heebal Kim. Ubiquitous polygenicity of human complex traits: genome-wide analysis of 49 traits in Koreans. 2013. PLoS Genetics. Vol.9:No.3:e1003355
8  Jaemin Kim, Taeheon Lee, Tae-Hun Kim, Kyung-Tai Lee, Heebal Kim. An integrated approach of comparative genomics and heritability analysis of pig and human on obesity trait: evidence for candidate genes on human chromosome 2. 2012. BMC Genomics. 19;13(1):711
9  Bo-Young Lee, Dong Hyun Shin, Seoae Cho, Kang-Seok Seo, and Heebal Kim. Genome-wide analysis of copy number variations reveals that ageing processes influence body fat distribution in Korea Associated Resource (KARE) cohorts. 2012. Human Genetics. 131:1795-180
10  Seok-Seong Kang, Hye Jin Kim, Mi Seon Jang, Sunjin Moon, Sang In Lee, Jun Ho Jeon, Jung Eun Baik, Ok-Jin Park, Young Min Son, Gi Rak Kim, Donghyun Joo, Heebal Kim, Jae Yong Han, Cheol-Heui Yun, Seung Hyun Han. Gene expression profile of human peripheral blood mononuclear cells induced by Staphylococcus aureus lipoteichoic acid 2012. International Immunopharmacology. 13:454-460
11  Dajeong Lim, Nam-Kuk Kim, Hye-Sun Park, Seung-Hwan Lee, Yong-Min Cho, Sung Jong Oh, Tae-Hun Kim, Heebal Kim. Identification of Candidate Genes related to Bovine Marbling using Pro-tein-Protein Interaction Networks. 2011. International Journal of Biological Sciences.
12  Hyo-Young Kim, Mi-Jeong Byun, and Heebal Kim. A replication study of genome-wide CNV association for hepatic biomarkers identifies nine genes associated with the liver function. 2011. BMB reports.
13  Kyung-Tai Lee, Mi-Jeong Byun, Kyung-Soo Kang, Eung-Woo Park, Seung-Hwan Lee, Seoae Cho, HyoYoung Kim, Kyu-Won Kim, TaeHeon Lee, Jong-Eun Park, WonCheoul Park, DongHyun Shin, Hong-Seog Park, Jin-Tae Jeon, Bong-Hwan Choi, Gul-Won Jang, Sang-Haeng Choi, Dae-Won Kim, Dajeong Lim, Hae-Suk Park, Mi-Rim Park, Jurg Ott, Lawrence B. Schook, Tae-Hun Kim & Heebal Kim. Neuronal genes for subcutaneous fat thickness in human and pig are identified by local genomic sequencing and combined SNP association study. 2011. PLoS ONE. 6(2): e16356
14  Bo-Young Lee, Seoae Cho, DongHyun Shin, and heebal Kim. Genome-wide association study of copy number variations associated with pulmonary function measures in Korea Associated Resource (KARE) cohorts. 2011. Genomics. 97(2):101-105
15  Hyo-Young Kim, Seoae Cho, Jeongmi Yu, Samsun Sung, and heebal Kim. Analysis of copy number variation in 8,842 Korean individuals reveals 39 genes associated with hepatic biomarkers AST and ALT. 2010. BMB reports. 43(8):547-53
16  Seoae Cho, Kyunga Kim, Young Jin Kim, Jong-Keuk Lee, Yoon Shin Cho, Jong-Young Lee, Bok-Ghee Han, Heebal Kim, Jurg Ott, Taesung Park. Joint Identification of Multiple Genetic Variants via Elastic-Net Variable Selection in a Genome-Wide Association Analysis.2010. Annals of Human Genetics.74:416-428
17  Kidong Kim, Yong-Tark Jeon, Jae Weon Kim, Noh-Hyun Park, Soon-Beom Kang, Hyo-Pyo Lee, In-Ae Park, Heebal Kim, Jeong Mook Lim, Jae Young Han and Yon-Sang Song. Cyclooxygenase-2 Expression in Ovarian Germ Cell Malignancies. 2008. J. Clin. Biochem. Nutr. 43:168-171
18  Sunjin Moon and Heebal Kim. Organization and evolution of mitochondrial gene clusters in human. 2008. Genomics 85-93
19  Dajeong Lim, Hee-Seok Oh and Heebal Kim. Theoretical Peptide Mass Distribution in the Non-Redundant Protein Database of the NCBI. 2006. Genomics & Informatics 65-70
20  Namshin Kim, Dajeong Lim, Sanghyuk Lee and Heebal Kim. ASePCR: Alternative splicing electronic RT-PCR in multiple tissues and organs. 2005. Nucleic Acids Research 33:681-685

  Pig
Publication
1  Hyeongmin Kim, Ki-Duk Song, Hyeon Jeong Kim, WonCheoul Park, Jaemin Kim, Taeheon Lee, Dong-Hyun Shin, Woori Kwak, Young-jun Kwon, Samsun Sung, Sunjin Moon, Kyung-Tai Lee, Namshin Kim, Joon Ki Hong, Kyung Yeon Eo, Kang Seok Seo, Girak Kim, Sungmoo Park, Cheol-Heui Yun, Hyunil Kim, Kimyung Choi, Jiho Kim, Woon Kyu Lee, Duk-Kyung Kim, Jae-Don Oh, Eui-Soo Kim, Seoae Cho, Hak-Kyo Lee, Tae-Hun Kim, Heebal Kim. Exploring the Genetic Signature of Body Size in Yucatan Miniature Pig. 2015. PLoS ONE.
2  Moon Sunjin, Kim Tae-Hun, Lee Kyung-Tai, Kwak Woori, Lee Taeheon, Lee Si-Woo, Kim Myung-Jick, Cho Kyuho, Kim Namshin, Chung Won-Hyong, Sung Samsun, Park Taesung, Cho Seoae, Groenen Martien, Nielsen Rasmus, Kim Yuseob, Kim Heebal. A genome-wide scan for signatures of directional selection in domesticated pigs. 2015. BMC Genomics. 16:130 doi:10.1186/s12864-015-1330-x
3  Woori Kwak, Jin-nam Kim, Daewon Kim, Jin Su Hong, Jae Hark Jeong, Heebal Kim, Seoae Cho, Yoo Yong Kim. Genome-wide DNA Methylation Profiles of Small Intestine and Liver in Fast-growing and Slow-growing Weaning Piglets. 2014. Asian Australas. J. Anim. Sci. (11):1532-1539
4  Hyeon-Soo Jeong, Dae-Won Kim, Se-Yoon Chun, Samsun Sung, Hyeon-Jeong Kim, Seoae Cho,Heebal Kim, Sung-Jong Oh. Native Pig and Chicken Breed Database: NPCDB. 2014. Asian Australas. J. Anim. Sci.
5  Simrinder Singh Sodhi, Won Cheoul Park, Mrinmoy Ghosh, Jin Nam Kim, Neelesh Sharma, Kwang Yun Shin, In Cheol Cho, Youn Chul Ryu, Sung Jong Oh, Sung Hoon Kim, Ki-Duk Song, Sang Pyo Hong, Seo Ae Cho, Hee Bal Kim, Dong Kee Jeong. Comparative transcriptomic analysis to identify differentially expressed genes in fat tissue of adult Berkshire and Jeju Native Pig using RNA-seq. 2014. Molecular Biology Reports September
6  Taeheon Lee, Dong-Hyun Shin, Seoae Cho, Hyun Sung Kang, Sung Hoon Kim, Hak-Kyo Lee, Heebal Kim and Kang-Seok Seo. Genome-wide association study of integrated meat quality-related traits of the Duroc pig breed. 2014. Asian-Austraiasian Journal of Animal Sciences. 27(3): 303-309
7  Jin-Kyu Park, Hye-Sun Kim, Kyung-Jun Uh, Kwang-Hwan Choi, Hyeong-Min Kim, Taeheon Lee, Byung-Chul Yang, Hyen-Jong Kim, Hak-Hyun Ka, Heebal Kim, Chang-Kyu Lee. Primed pluripotent cell lines derived from various embryonic origins and somatic cells in pig. 2013. PLoS ONE. 8(1):e52481
8  Jaemin Kim, Taeheon Lee, Tae-Hun Kim, Kyung-Tai Lee, Heebal Kim. An integrated approach of comparative genomics and heritability analysis of pig and human on obesity trait: evidence for candidate genes on human chromosome 2. 2012. BMC Genomics. 19;13(1):711
9  Mingoo Kim, Heewon Seo, Yohan Choi, Jangsoo Shim, Heebal Kim, Chang-Kyu Lee and Hakhyun Ka. Microarray Analysis of Gene Expression in the Uterine Endometrium during the Implantation Period in Pigs. August 2012. Asian-Aust.J.Anim.Sci. Vol.25:No.8:1102-1116
10  International Pig Genome Consortium. Analyses of pig genomes provide insight into porcine demography and evolution. 2012. Nature. 491(7424):393-8
11  Xiaoping Li, Sang-Wook Kim, Kyoung-Tag Do, You-Kyoung Ha, Yun-Mi Lee, Sook Hee Yoon, Heebal Kim, Jong-Joo Kim, Bong-Hwan Choi, Kwan-Suk Kim. Analyses of porcine public SNPs in coding-gene regions by re-sequencing and phenotypic association studies. 2011. Mol Biol Rep. 38(6):3805-3820
12  Dajeong Lim, Kyung-Tai Lee, Jong Eun Park, Heebal Kim, Tae-Hun Kim, Bong-Hwan Choi, Myung Jick Kim, Hye-Sun Park, Gul-Won Jang. Analysis of gene expression profiles from subcutaneous adipose tissue of two pig breeds. 2011. Genes & Genomics. 33:693-699
13  Kyung-Tai Lee, Mi-Jeong Byun, Kyung-Soo Kang, Eung-Woo Park, Seung-Hwan Lee, Seoae Cho, HyoYoung Kim, Kyu-Won Kim, TaeHeon Lee, Jong-Eun Park, WonCheoul Park, DongHyun Shin, Hong-Seog Park, Jin-Tae Jeon, Bong-Hwan Choi, Gul-Won Jang, Sang-Haeng Choi, Dae-Won Kim, Dajeong Lim, Hae-Suk Park, Mi-Rim Park, Jurg Ott, Lawrence B. Schook, Tae-Hun Kim & Heebal Kim. Neuronal genes for subcutaneous fat thickness in human and pig are identified by local genomic sequencing and combined SNP association study. 2011. PLoS ONE. 6(2): e16356
14  Dajeong Lim, Yong-Min Cho, Kyung-Tai Lee, Yeonkyung Kang, Samsun Sung, Jungrye Nam, Eung-Woo Park, Sung-Jong Oh, Seok-Ki Im and Heebal Kim. The Pig Genome Database (PiGenome): An integrated database for pig genome research. 2009. Mammalian Genome 20:60-66
15  Xiaoping Li, Zhi-Liang Hu, Kyungtag Do, Sunjin Moon, Youkyoung Ha, Heebal Kim, Bong-Hwan Choi, Max Rothschild, Jmaes Reedcy and Kwan-Suk Kim. Development of an in silico coding gene SNP map in pigs. 2008. Animal Genetics. 446-450
16  Hakhyun Ka, Heewon Seo, Mingoo Kim, Sunjin Moon, Heebal Kim and Chang-Kyu Lee. Gene Expression Profiling of the Uterus with Embryos Cloned by Somatic Cell Nuclear Transfer on Day 30 of Pregnancy. 2007. Animal Reproduction Science 108:79-91
17  Tae-Hun Kim, Nam-Soon Kim, Dajeong Lim, Kyung-Tai Lee, Jung-Hwa Oh, Hye-Sook Park, Gil-Won Jang, Hyung-Yong Kim, Mina Jeon, Bong-Hwan Choi, H. Y. Chung and Heebal Kim. Generation and Analysis of Large-Scale Expressed Sequence Tags (ESTs) from a Full-Length Enriched cDNA Library of Porcine Backfat Tissue. 2006. BMC Genomics 7:36
18  Sidong Kim, Agapita Salces, Hongrip Min, Kwanghyun Cho and Heebal Kim. Inbreeding Levels and Pedigree Structure of Landrace, Yorkshire and Duroc Populations of Major Swine Breeding Farms in Republic of Korea. 2006. AJAS 9:1217-1224
19  Kyung-Tai Lee, Eung-Woo Park, Sunjin Moon, Hye-Sook Park, Hyung-Yong Kim, Kyung-Soo Kang, Mi-jeong Byun, Cheong-il Cheong, Sung-jong Oh, Heebal Kim, Dong-Sang Suh, Tae-Hun Kim. Genomic sequence analysis of a potential QTL region for fat trait on pig chromosome 6. 2006. Genomics 87:218-224

  Cattle
Publication
1  Bo-Young Lee, Kwang-Nyeong Lee, Taeheon Lee, Jong-Hyeon Park, Su-Mi Kim, Hyang-Sim Lee, Dong-Su Chung, Hang-Sub Shim, Hak-Kyo Lee, Heebal Kim. Bovine Genome-wide Association Study for Genetic Elements to Resist the Infection of Foot-and-mouth Disease in the Field. 2014. Asian Australas. J. Anim. Sci.DOI: http://dx.doi.org/10.5713/ajas.14.0383
2  Kwondo Kim, Woori Kwak, Sam-Sun Sung, Seoae Cho, Heebal Kim, Duhak Yoon and Hyun-Jeong Lee. A Novel Genetic Variant Database for Korean Native Cattle (Hanwoo): HanwooGDB 2014. Genes & Genomics.
3  Hyun-Jeong Lee, Jaemin Kim, Taeheon Lee, Jun Kyu Son, Ho-Baek Yoon, Kwang-Soo Baek, Jin Young Jeong, Yong-Min Cho, Kyung-Tai Lee, Byoung-Chul Yang, Kwanghyeon Cho, Tae-Hun Kim, Eung Gi Kwon, Jungrye Nam, Woori Kwak, Seoae Cho, Heebal Kim. Deciphering the genetic blueprint behind Holstein milk proteins and production. 2014. Genome Biology and Evolution. Genome Biol Evol (2014) 6 (6): 1366-1374.doi: 10.1093/gbe/evu102 First published online: May 14, 2014
4  Dong-Hyun Shin, Hyun-Jeong Lee, Seoae Cho, Hyeon Jeong Kim, Jae Yeon Hwang, Chang-Kyu Lee, JinYoung Jeong, Duhak Yoon, Heebal Kim. Deleted copy number variation of Hanwoo and Holstein using next generation sequencing at the population level. 2014. BMC Genomics. Accepted
5  Dajeong Lim, Nam-Kuk Kim, Seung-Hwan Lee, Hye-Sun Park, Yong-Min Cho, Han-Ha Chai and Heebal Kim. Characterization of Genes for Beef Marbling Based on Applying Gene Coexpression Network. 2014. International Journal of Genomics.
6  Dajeong Lim, Seung-Hwan Lee, Nam-Kuk Kim, Yong-Min Cho, Han-Ha Chai1, Hwan-Hoo Seong and Heebal Kim. Gene Co-expression Analysis to Characterize Genes Related to Marbling Trait in Hanwoo (Korean) Cattle. 2013. Asian-Australasian Journal of Animal Sciences. 26(1) : 19-29
7  Dong-Hyun Shin, Kwang-Hyun Cho, Kyoung-Do Park, Hyun-Jeong Lee, Heebal Kim. Accurate Estimation of Effective Population Size in the Korean Dairy Cattle Based on Linkage Disequilibrium Corrected by Genomic Relationship Matrix. 2013. Asian-Austraiasian Journal of Animal Sciences.
8  Woncheoul Park, Hee-Seok Oh, Heebal Kim. Acceleration of X-chromosome gene order evolution in the cattle lineage. 2013. BMB Reports. 46(6): 310-315
9  Taeheon Lee, Seoae Cho, Kang Seok Seo, Jongsoo Chang, Heebal Kim and Duhak Yoon. Genetic variants and signatures of selective sweep of Hanwoo population (Korean native cattle). 2013. BMB Reports. 46(7): 346-351
10  Hyung-jeong Lee, Mi Jang, Hyeongmin Kim, Woori Kwak, WonCheoul Park, Jae-Yeon Hwang, Chang-Kyu Lee, Gul Won Jang, Mina Park, Hyeong-Cheol Kim, Jin Young Jeong, KangSeok Seo, Heebal Kim, Seoae Cho, Bo-Young Lee. Comparative transcriptome analysis of adipose tissues reveals that ECM-receptor interaction involved in the depot-specific adipogenesis in cattle. 2013. PLoS One. 8(6):e66267
11  Zewdu Edea, Hailu Dadi, Sang-Wook Kim, Tadelle Dessie, Taeheon Lee, Heebal Kim, Jong-Joo Kim, Kwan-Suk Kim. Genetic diversity, population structure and relationships in indigenous cattle populations of Ethiopia and Hanwoo breeds using SNP markers. 2013. Frontiers in Livestock Genomics. doi: 10.3389/fgene.2013.00035
12  Bo-Young Lee, Tai-Young Hur, Young-Hun Jung, Heebal Kim. Identification of BoLA-DRB3.2 alleles in Korean Native Cattle (Hanwoo) and Holstein populations using a next generation sequencer. 2012. Animal Genetics. 43:438-441
13  Jeongsoo Lee, Heebal Kim and Sidong Kim. Development of an Integrated General Model (IGM) System for Comparison of Genetic Gains from Different Bull Selection Strategies for Korean Brown Cattle (Hanwoo). 2011. Asian-Aust. J. Anim. Sci. 24(11):1483-1503
14  Dajeong Lim, Yong-Min Cho, Seung-Hwan Lee, Samsun Sung, Jungrye Nam, Duhak Yoon, Younhee Shin, Hye-Sun Park and Heebal Kim. An integrated genomic resource based on Korean cattle (Hanwoo) transcripts. 2010. Austraiasian Journal of Animal Sciences.
15  Dajeong Lim, Seung Hwan Lee, Yong Min Cho, Duhak Yoon, Younhee Shin, Kyu Won Kim, Hye Sun Park, Heebal Kim. Transcript profiling of expressed sequence tags from intramuscular fat, longissimus dorsi muscle and liver in Korean cattle (Hanwoo). 2010. BMB reports. 43(2):115-121
16  HyoYoung Kim, Heebal Kim. Comparative analysis of repetitive elements of imprinting genes reveals eleven candidate impriting genes in cattle. 2009. Asian-Austraiasian Journal of Animal Sciences. 22:6:893-899
17  Seoae Cho, Tae Sung Park, Du-Hak Yoon, Hyun Sub Cheong, Sohg Namgoong, Byung Lae Park, Hye Won Lee, Chang Soo Han, Eun Mi Kim, Il-Cheong Cheong, Heebal Kim and Hyoung Doo Shin. Identification of Genetic polymorphisms in FABP3 - 4 and Putative Association with Back Fat Thickness in Korean Native Cattle. 2008. BMB reports 41:29-34
18  Sunjin Moon, Hyoung Doo Shin, Hyun Sub Cheong, Hye Young Cho, Sohg Namgoong, Eun Mi Kim, Chang Su Han, Samsun Sung and Heebal Kim. BcSNPdb: Bovine coding region single nucleotide polymorphisms located proximal to quantitative trait loci. 2007. Journal of Biochemistry and Molecular Biology 40(1):95-9

  Virus
Publication
1  Taehyung Kwon, Sook Hee Yoon, Kyu-Won Kim, Kelsey Caetano-Anolles, Seoae Cho, Heebal Kim. Time-calibrated phylogenomics of the classical swine fever viruses: genome-wide Bayesian coalescent approach. 2015. PLoS ONE.
2  Sook Hee Yoon, Hyekwon Kim, Jaemin Kim, Hak-Kyo Lee, Bongkyun Park, Heebal Kim. Complete genome sequences of porcine reproductive and respiratory syndrome viruses: perspectives on their temporal and spatial dynamics. 2013. Molecular Biology Reports. 40(12): 6843-6853
3  Anita Khatiwara, Tieshan Jiang, Sam-Sun Sung, Turki Dawoud, Jeong Nam Kim, Dhruva Bhattacharya, Heebal Kim, Steven C. Ricke and Young Min Kwon. Genome scanning for conditionally essential genes in Salmonella enterica Serotype Typhimurium. 2012. Appl Environ Microbiol. 78(9):3098-3107
4  Sook Hee Yoon, Hyekwon Kim, Bongkyun Park and Heebal Kim. Tracing the genetic history of porcine reproductive and respiratory syndrome viruses derived from the complete ORF 5-7 sequences: a Bayesian coalescent approach. 2012. Archives of Virology. 157:2143-2151
5  Kyung Mo Kim, Kyu-Won Kim, Samsun Sung, Heebal Kim. A genome-wide identification of genes potentially associated with host specificity of Brucella species. 2011. The Journal of Microbiology. 49(5):768-75
6  Jun-Sang Ham, Taeheon Lee, Mi-Jeong Byun, Kyung-Tae Lee, Min-Kyung Kim, Gi-Sung Han, Seok-Geun Jeong, Mi-Hwa Oh, Dong-Hun Kim, Heebal Kim. Complete Genome Sequence of Bifidobacterium longum subsp. longum KACC 91563. 2011. Journal of Bacteriology. 193(18):5044
7  Yoon, S.H., K.-N. Lee, J.-H. Park, H. Kim. Molecular epidemiology of foot-and-mouth disease virus serotypes A and O with emphasis on Korean isolates: temporal and spatial dynamics. 2011. Arch. Virol.
8  Sook Hee Yoon, Woncheoul Park, Donald P. King, and Heebal Kim.Phylogenomics and molecular evolution of foot-and-mouth disease virus. 2011. Molecules and Cells. 1:413-421
9  Kwang-Nyeong Lee, Tung Nguyen, Su-Mi Kim, Jong-Hyeon Park, Hoa T. Do, Huong T.Ngo, Duong T. Mai, Seo-Yong Lee, Cam V. Nguyen, Sook Hee Yoon, Chang-Hee Kweon, In-Soo Cho, Heebal Kim. Direct typing and molecular evolutionary analysis of field samples of foot-and-mouth disease virus collected in Vietnam between 2006 and 2007. 2010.Veterinary Microbiology. 147:244-252
10  Choi JY, Kwon SJ, Roh JY, Yang TJ, Yoon SH, Kim H, Li MS, Park BS, Woo SD, Jin BR, Kim Y, Je YH. Sequence and gene organization of 24 circles from the Cotesia plutellae bracovirus genome. 2009. Arch Virol. 154:1313-1327
11  Kwang-Nyeong Lee, Lae-Ku Oem, Jong-Hyeon Park, Su-Mi Kim, Seo-Yong Lee, Sh, Tserendorj, R. Sodnomdarjaa, Yi-Seok Joo, Heebal Kim. Evidence of recombination in a new isolate of foot-and mouth disease virus serotype Asia 1. 2009. Virus Research 139:117-121

  Horse
Publication
1  Young-Sup Lee, Jin Woo Lee, Heebal Kim. Estimating effective population size of thoroughbred horses using linkage disequilibrium and theta value. 2014. livestock science
2  Joon-Ho Lee, Taeheon Lee, Hak-Kyo Lee, Byung-Wook Cho, Dong-Hyun Shin, Kyoung-Tag Do, Samsun Sung, Woori Kwak, Hyeon Jeong Kim, Heebal Kim, Seoae Cho, Kyung-Do Park. Thoroughbred Horse Single Nucleotide Polymorphism and Expression Database: HSDB. 2014. Asian Australas. J. Anim. Sci.
3  Kyung-Do Park, Hyeongmin Kim, Jae Yeon Hwang, Chang-Kyu Lee, Kyoung-Tag Do, Heui-Soo Kim, Young-Mok Yang, Young-jun Kwon, Jaemin Kim, Hyeon Jeong Kim, Ki-Duk Song, Jae-Don Oh, Heebal Kim, Byung-Wook Cho, Seoae Cho, Hak-Kyo Lee. Copy Number Deletion Has Little Impact on Gene Expression Levels in Racehorses. 2014. Asian Australas. J. Anim. Sci.
4  Woncheoul Park, Jaemin Kim, Hyeonjeong Kim, JaeYoung Choi, Jeong-Woong Park, Hyun-Woo Cho, Byeong-Woo Kim, Myung Hum Park, Teak-Soon Shin, Seong-Keun Cho, Jun-Kyu Park, Heebal Kim, Jae Yeon Hwang, Chang-Kyu Lee, HAK-KYO Lee, Seoae Cho, Byung-Wook Cho. Investigation of de novo unique differentially expressed genes related to evolution in exercise response during domestication in Thoroughbred race horses. 2014. PLoS ONE. doi: 10.1371/journal.pone.0091418
5  Hyeongmin Kim, Taeheon Lee, WonCheoul Park, Jin Woo Lee, Jaemin Kim, Bo-Young Lee, Hyeonju Ahn, Sunjin Moon, Seoae Cho, Kyoung-Tag Do, Heui-Soo Kim, Hak-Kyo Lee, Chang-Kyu Lee, Hong-Sik Kong, Young-Mok Yang, Jongsun Park, Hak-Min Kim, Byung Chul Kim, Seungwoo Hwang, Jong Bhak, Dave Burt, Kyoung-Do Park, Byung-Wook Cho, and Heebal Kim. Peeling Back the Evolutionary Layers of Molecular Mechanisms Responsive to Exercise-Stress in the Skeletal Muscle of the Racing Horse. 2013. DNA Research. doi:10.1093/dnares/dst010
6  Jong-Eun Park, Jeong-Ran Lee, Seungyoon Oh, Jin Woo Lee, Hee-Seok Oh, heebal Kim. Principal components analysis applied to genetic evaluation of racing performance of Thoroughbred race horses in Korea. 2011. Livestock Science. 135:293-299
7  Hee-Seok Oh, Dongik Jang, Seungyoon Oh and heebal Kim. Improved Statistical Testing of Two-class Microarrays with a Robust Statistical Approach. 2010. Interdisciplinary Bio Central. 2(4):1-6
8  Jeong-Ran Lee, Jin Woo Lee, Heebal Kim and Hee-Seok Oh. Prediction models for racing performance of domestic progeny of Thoroughbreds. 2010. Journal of Animal Science and Technology. 52(6) 459-466
9  Seungyoon Oh, Jong Eun Park, Jeong Ran Lee, Jin Woo Lee, Hee Seok Oh and Heebal Kim. Estimation of Genetic Parameters and Annual Trends for Racing Times of Thoroughbred Racehorses. 2009. J.Anim Sci. & Technol.(Kor.) 51(2) 129-134

  Mouse
Publication
1  Seung Pyo Gong, Heebal Kim, Eun Ju Lee, Seung Tae Lee, Sunjin Moon, Ho-Joon Lee and Jeong Mook Lim. Change in Gene Expression of Mouse Embryonic Stem Cells Derived from Parthenogenetic Activation. 2009. Human Reproduction 24:4:805-814
2  Seung Pyo Gong, Eun Ju Lee, Seung Tae Lee, Heebal Kim, Sang Hun Lee, Ho Jae Han and Jeong Mook Lim. Improved establishment of autologous stem cells derived from preantral follicle culture and oocyte parthenogenesis. 2008. Stem Cells and Development. 17:695-712
3  Namshin Kim, Dajeong Lim, Sanghyuk Lee and Heebal Kim. ASePCR: Alternative splicing electronic RT-PCR in multiple tissues and organs. 2005. Nucleic Acids Research 33:681-685

  Bacteria
Publication
1  Sooyeon Lim, Dong-Hoon Lee, Woori Kwak, Hakdong Shin, Hye-Jin Ku, Jong-eun Lee, Gun Eui Lee, Heebal Kim, Sang-Ho Choi, Sangryeol Ryu, Ju-Hoon Lee.Comparative Genomic Analysis of Staphylococcus aureus FORC_001 and S. aureus MRSA252 Reveal the Characteristics of Antibiotic Resistance and Virulence Factors for Human Infection. 2014. J. Microbiol. Biotechnol DOI : 10.4014/jmb.1410.10005
2  Jintaek Im, Taeheon Lee, Jun Ho Jeon, Jung Eun Baik, Kyoung Whun Kim, Seok-Seong Kang, Cheol-Heui Yun, Heebal Kim, Seung Hyun Han. Gene expression profiling of bovine mammary gland epithelial cells stimulated with lipoteichoic acid plus peptidoglycan from Staphylococcus aureus. 2014. International Immunopharmacology
3  Jun Sang Ham, Woori Kwak, Oun Ki Chang, Gi Sung Han, Seok Geun Jeong, Kuk Hwan Seol, Hyoun Wook Kim, Geun Ho Kang, Beom Young Park, Hyun-Jeong Lee, Samsun Sung, Taeheon Lee,Seoae Cho, Heebal Kim. De novo assembly and comparative analysis of the Enterococcus faecalis genome (KACC91532) from a Korean neonate. 2013. Journal of Microbiology and Biotechnology. 23(7): 966-973
4  Jun-Sang Ham, Seung-Gyu Lee, Seok-Geun Jeong, Mi-Hwa Oh, Dong-Hun Kim, Taehun Lee, Bo-Young Lee, Sook Hee Yoon, Heebal Kim. Powerful usage of phylogenetically diverse Staphylococcus aureus control strains for detecting multidrug resistance genes in transcriptomics studies. 2010. Molecules and Cells 30:71-76
5  Dong Hwan Lee, Hye Sook Jeong, Kyung Mo Kim, Heebal Kim, and Sang Ho Choi. A consensus sequence for binding of SmcR, a vibrio vulnificus LuxR homologue and genome-wide identification of the SmcR regulon. 2008. Journal of Biological Chemistry 283:35:23610-23618
6  Kyung Mo Kim, Samsun Sung, Gustavo Caetano-Anolls, Jae Yong Han, Heebal Kim. An Approach of Orthology Detection from Homologous Sequences under Minimum Evolution. 2008. Nucleic Acid Research 36:17:e110

  Mammals
Publication
1  HyoYoung Kim, Samsun Sung, Seoae Cho, Tae-Hun Kim, Heebal Kim. VCS: tool for Visualizing Copy number variation and Single nucleotide polymorphism. 2014. Asian-Austraiasian Journal of Animal Sciences. 2014;27(12): 1691-1694
2  Hyeonju Ahn, Kyu-Won Kim, Hyeon Jeong Kim, Seoae Cho, and Heebal Kim. Differential Evolution between Monotocous and Polytocous Species. 2014. Asian-Australasian Journal of Animal Sciences. 27(4):464
3  Kyu-Won Kim, David W. Burt, Heebal Kim, Seoae Cho. Identification of differentially evolved genes: An alternative approach to detection of accelerated molecular evolution from genome-wide comparative data. 2013. Evolutionary Bioinformatics. 9: 285-299
4  Hyeongmin Kim, Taeheon Lee, Samsun Sung, Changkyu Lee & Heebal Kim. Reanalysis of Ohno's hypothesis on conservation of the size of the X chromosome in mammals. 2012. Animal Cells and Systems. Volume16:Issue6:438-446.
5  Heebal Kim, Samsun Sung and Robert Klein. Expansion of symmetric exon-bordering domains does not explain evolution of lineage specific genes in mammals. 2007. Genetica 131:59-68.
6  Heebal Kim, Robert Klein, Jacek Majewski & Jurg Ott. Estimating rates of alternative splicing in mammals and invertebrates. 2004. Nature Genetics 36:915-16

  Bird
Publication
1  Guojie Zhang,Cai Li, Qiye Li, Bo Li, Denis M. Larkin, Chul Lee, Jay F. Storz, Agostinho Antunes, Matthew J. Greenwold, Robert W. Meredith, Anders Odeen, Jie Cui, Qi Zhou, Luohao Xu, Hailin Pan, Zongji Wang, Lijun Jin, Pei Zhang, Haofu Hu, Wei Yang, Jiang Hu, Jin Xiao, Zhikai Yang, Yang Liu, Qiaolin Xie, Hao Yu, Jinmin Lian, Ping Wen, Fang Zhang, Hui Li, Yongli Zeng, Zijun Xiong, Shiping Liu, Long Zhou, Zhiyong Huang, Na An, Jie Wang, Qiumei Zheng, Yingqi Xiong, Guangbiao Wang, Bo Wang, Jingjing Wang, Yu Fan, Rute R. da Fonseca, Alonzo Alfaro-Nunez, Mikkel Schubert, Ludovic Orlando, Tobias Mourier, Jason T. Howard, Ganeshkumar Ganapathy, Andreas Pfenning, OsceolaWhitney, Miriam V. Rivas, Erina Hara, Julia Smith, Marta Farre, Jitendra Narayan, Gancho Slavov, Michael N Romanov, Rui Borges, Joao Paulo Machado, Imran Khan, Mark S. Springer, John Gatesy, Federico G. Hoffmann, Juan C. Opazo, Olle Hastad, Roger H. Sawyer, Heebal Kim, Kyu-Won Kim, Hyeon Jeong Kim, Seoae Cho, Ning Li, Yinhua Huang, Michael W. Bruford, Xiangjiang Zhan, Andrew Dixon, Mads F. Bertelsen, Elizabeth Derryberry, Wesley Warren, Richard K Wilson, Shengbin Li, David A. Ray, Richard E. Green, Stephen J. O\xa1\xafBrien, Darren Griffin, Warren E. Johnson, David Haussler, Oliver A. Ryder, Eske Willerslev, Gary R. Graves, Per Alstrom, Jon Fjeldsa, David P. Mindell, Scott V. Edwards, Edward L. Braun, Carsten Rahbek, David W. Burt, Peter Houde, Yong Zhang, Huanming Yang, Jian Wang, Avian Genome Consortium,\xa1\xd7 Erich D. Jarvis, M. Thomas P. Gilbert, JunWang Comparative genomics reveals insights into avian genome evolution and adaptation. 2014. Science DOI: 10.1126/science.1251385
2  Seok Jin Kang, Jin Won Choi, Sun Young Kim, Kyung Je Park, Tae Min Kim, Young Mok Lee, Heebal Kim, Jeong Mook Lim, Lae Yong Han. Reproduction of Wild Birds via Interspecies Germ Cell Transplantation. 2008. Biology of Reproduction 79:931-937

  Invertebrates
Publication
1  Heebal Kim, Robert Klein, Jacek Majewski & Jurg Ott. Estimating rates of alternative splicing in mammals and invertebrates. 2004. Nature Genetics 36:915-16

  Turkey
Publication
1  Rami A. Dalloul, Julie A. Long, Aleksey V. Zimin, Luqman Aslam, Kathryn Beal, Le Ann Blomberg , David W. Burt, Oswald Crasta, Richard P.M.A. Crooijmans , Kristal Cooper, Roger A. Coulombe, Supriyo De, Mary E. Delany, Jerry B. Dodgson, Jennifer J. Dong , Clive Evans, Paul Flicek, Liliana Florea, Otto Folkerts, Martien A.M. Groenen, Tim T. Harkins, Javier Herrero, Steve Hoffmann, Hendrik-Jan Megens, Andrew Jiang, Pieter de Jong, Pete Kaiser, Heebal Kim, Kyu-Won Kim, Sungwon Kim, David Langenberger, Mi-Kyung Lee, Taeheon Lee, Shrinivasrao Mane, Guillaume Marcais, Manja Marz, Audrey P. McElroy, Thero Modise, Mikhail Nefedov, C?dric Notredame, Ian R. Paton, William S. Payne, Geo Pertea, Dennis Prickett, Daniela Puiu, Dan Qioa, Emanuele Raineri, Magali Ruffier, Steven L. Salzberg, Michael C. Schatz, Chantel Scheuring, Carl J. Schmidt, Steven Schroeder, Stephen MJ Searle, Edward J. Smith, Jacqueline Smith, Tad S. Sonstegard, Peter F. Stadler, Hakim Tafer, Zhijian (Jake) Tu, Curtis P. Van Tassell, Albert J. Vilella, Kelly P. Williams, James A. Yorke, Liqing Zhang, Hong-Bin Zhang, Xiaojun Zhang, Yang Zhang, and Kent M. Reed. Multi-platform Next Generation Sequencing of the Domestic Turkey (Meleagris gallopavo): Genome Assembly and Analysis. 2010. PLoS Biology. Sep 7;8(9)

  Duck
Publication
1  Yinhua Huang, Yingrui Li, David W Burt, Hualan Chen, Yong Zhang, Wubin Qian, Heebal Kim, Shangquan Gan, Yiqiang Zhao, Jianwen Li, Kang Yi, Huapeng Feng, Pengyang Zhu, Bo Li, Qiuyue Liu, Suan Fairley, Katharine E Magor, Zhenlin Du, Xiaoxiang Hu, Laurie Goodman, Hakim Tafer, Alain Vignal, Taeheon Lee, Kyu-Won Kim, Zheya Sheng, Yang An, Steve Searle, Javier Herrero, Martien A M Groenen, ..., Frederique Pitel, Jun Wang & Ning Li. The duck genome and transcriptome provide insight into an avian influenza virus reservoir species. 2013. Nature Genetics. 45: 776-783

  Goat
Publication
1  SooYeon Lim, Jaehyun Seo, Hyunbong Choi, Duhak Yoon, Jungrye Nam, Heebal Kim, Seoae Cho, and Jongsoo Chang. Metagenome Analysis of Protein Domain Collocation within Cellulase Genes of Goat Rumen Microbes. 2013. Asian-Austraiasian Journal of Animal Sciences. 26(8): 1144-1151

  plants
Publication
1  Jonghoon Lee, Nur Kholilatul Izzah, Murukarthick Jayakodi, Sampath Perumal, Ho Jun Joh, Hyeon Ju Lee, Sang-Choon Lee, Jee Young Park, Ki-Woung Yang, Il-Sup Nou, Joodeok Seo, Jaeheung Yoo, Youngdeok Suh, Kyounggu Ahn, Ji Hyun Lee,Gyung Ja Choi, Yeisoo Yu, Heebal Kim and Tae-Jin Yang. Genome-wide SNP identification and QTL mapping for black rot resistance in cabbage. 2015. BMC Plant Biology. 15:32 doi:10.1186/s12870-015-0424-6