Heebal Kim's Laboratory

Publication

    2024

  1. Sohyoung Won, Jaewoong Yu, and Heebal Kim. Identifying genes within pathways in unannotated genomes with PaGeSearch. Genome Research. 2024. DOI: 10.1101/gr.278566.123. [LINK]


  2. Truc Ly Nguyen , Heebal Kim. Integrating immunoinformatics and computational epitope prediction for a vaccine candidate against respiratory syncytial virus. Infectious Disease Modelling. 2024. DOI: 10.1016/j.idm.2024.04.005. [LINK]


  3. Truc Ly Nguyen and Heebal Kim. Discovering peptides and computational investigations of a multiepitope vaccine target Mycobacterium tuberculosis. Synthetic and Systems Biotechnology. 2024. DOI: 10.1016/j.synbio.2024.03.010. [LINK]


  4. Truc Ly Nguyen & Heebal Kim. Immunoinformatics and computational approaches driven designing a novel vaccine candidate against Powassan virus. Scientific Reports. 2024. DOI: 10.1038/s41598-024-56554-9. [LINK]


  5. Won Jun Kima, Bum Ju Kila, Chaewon Leea, Tae Young Kimb, Goeun Hanb, Yukyung Choic, Kyunghwan Kimc,Chang Hun Shinc, Seung-Young Parkd, Heebal Kima,e, Myunghoo Kimb, and Chul Sung Huh. B. longum CKD1 enhances the efficacy of anti-diabetic medicines through upregulation of IL- 22 response in type 2 diabetic mice. Gut Microbes. 2024. DOI: 10.1080/19490976.2024.2319889. [LINK]


  6. SangJung Lee, Charton Clémentine & Heebal Kim. Exploring the genetic factors behind the discrepancy in resistance to bovine tuberculosis between African zebu cattle and European taurine cattle. Scientific Reports. 2024. DOI: 10.1038/s41598-024-52606-2. [LINK]


  7. Delphine Larivière, Linelle Abueg, Nadolina Brajuka, Cristóbal Gallardo-Alba, Bjorn Grüning, Byung June Ko, Alex Ostrovsky, Marc Palmada-Flores, Brandon D. Pickett, Keon Rabbani, Agostinho Antunes, Jennifer R. Balacco, Mark J. P. Chaisson, Haoyu Cheng, Joanna Collins, Melanie Couture, Alexandra Denisova, Olivier Fedrigo, Guido Roberto Gallo, Alice Maria Giani, Grenville MacDonald Gooder, Kathleen Horan, Nivesh Jain, Cassidy Johnson, Heebal Kim, Chul Lee, Tomas Marques-Bonet, Brian O’Toole, Arang Rhie, Simona Secomandi, Marcella Sozzoni, Tatiana Tilley, Marcela Uliano-Silva, Marius van den Beek, Robert W. Williams, Robert M. Waterhouse, Adam M. Phillippy, Erich D. Jarvis, Michael C. Schatz, Anton Nekrutenko and Giulio Formenti. Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy. Nature Biotechnology. 2024. DOI: 10.1038/s41587-023-02100-3. [LINK]


    8. 2023

  8. Young Ho Lee, Linelle Abueg, Jin-Koo Kim, Young Wook Kim, Olivier Fedrigo, Jennifer Balacco, Giulio Formenti, Kerstin Howe, Alan Tracey, Jonathan Wood, Françoise Thibaud-Nissen, Bo Hye Nam, Eun Soo No, Hye Ran Kim, Chul Lee, Erich D. Jarvis and Heebal Kim. Chromosome-level genome assembly of chub mackerel (Scomber japonicus) from the Indo-Pacific Ocean. Scientific Data. 2023. DOI: 10.1038/s41597-023-02782-z. [LINK]


  9. Truc Ly Nguyen and Heebal Kim. Designing a Multiepitope Vaccine against Eastern Equine Encephalitis Virus: Immunoinformatics and Computational Approaches. ACS Omega. 2023. DOI: 10.1021/acsomega.3c07322. [LINK]


  10. Kwondo Kim, Donghee Kim, Olivier Hanotte, Charles Lee, Heebal Kim, Choongwon Jeong Author Notes. Inference of admixture origins in indigenous African cattle. Molecular Biology and Evolution. 2023. DOI: 10.1093/molbev/msad257. [LINK]


  11. Won Jun Kim, Ri Ryu, Eun-Hee Doo, Yukyung Choi, Kyunghwan Kim, Byoung Kook Kim, Heebal Kim, Myunghoo Kim & Chul Sung Huh. Supplementation with the probiotic strains Bifidobacterium longum and Lactiplantibacillus rhamnosus alleviates glucose intolerance by restoring the IL-22 response and pancreatic beta cell dysfunction in type 2 diabetic mice. Probiotics and Antimicrobial Proteins. 2023. DOI: 10.1007/s12602-023-10156-5. [LINK]


  12. Vladimir Li, Youngho Lee, Chul Lee & Heebal Kim. Repurposing existing drugs for monkeypox: applications of virtual screening methods. Genes & Genomics. 2023. DOI: 10.1007/s13258-023-01449-8. [LINK]


  13. Jaehoon Jung, So Yun Jhang, Bongsang Kim, Bomin Koh, Chaeyoung Ban, Hyojung Seo, Taeseo Park, Won-Jae Chi, Soonok Kim, Heebal Kim & Jaewoong Yu. The first high-quality genome assembly and annotation of Patiria pectinifera. Scientific Data. 2023. DOI: 10.1038/s41597-023-02508-1. [LINK]


  14. Dong-Jae Youm, Byung June Ko, Donghee Kim, Myeongkyu Park, Sohyoung Won, Young Ho Lee, Bongsang Kim, Donghyeok Seol, Han-Ha Chai, Dajeong Lim, Choongwon Jeong, and Heebal Kim. The idiosyncratic genome of Korean long-tailed chicken as a valuable genetic resource. iScience. 2023. DOI: 10.1016/j.isci.2023.106236. [LINK]


  15. Soyoung Yeo, Hyunjoon Park, Heebal Kim, Chang Beom Ryu & Chul Sung Huh. Selenobaculum gbiensis gen. nov. sp. nov., a new bacterium isolated from the gut microbiota of a patient with Crohn's disease. Scientific Reports. 2023. DOI: 10.1038/s41598-023-42017-0. [LINK]


  16. Jisung Jang, Jaehoon Jung, Young Ho Lee, Sanghyun Lee, Myunggi Baik & Heebal Kim. Chromosome-level genome assembly of Korean native cattle and pangenome graph of 14 Bos taurus assemblies. Scientific Data. 2023. DOI: 10.1038/s41597-023-02453-z. [LINK]


  17. Comparison of SNP variation and extent of linkage disequilibrium in Holstein and Jersey cattle populations in Korea. Journal of Animal Breeding and Genomics. 2023. DOI: -. [LINK]


  18. Vladimir Li, Chul Lee, Youngho Lee & Heebal Kim. Molecular dynamics simulation of pyruvate kinase to investigate improved thermostability of artificially selected strain in Enterococcus faecium. Genes & Genomics. 2023. DOI: 10.1007/s13258-023-01373-x. [LINK]


  19. Bongsang Kim,Yujung Lee,Bomin Koh,So Yun Jhang,Chul Hee Lee,Soonok Kim,Won-Jae Chi,Seoae Cho,Heebal Kim ,Jaewoong Yu. Distinctive origin and evolution of endemic thistle of Korean volcanic island: Structural organization and phylogenetic relationships with complete chloroplast genome. PLoS ONE. 2023. DOI: https://doi.org/10.1371/journal.pone.0277471. [LINK]


  20. Jisung Jang, Bongsang Kim, So Yun Jhang, Byeongyong Ahn, Mingue Kang, Chankyu Park, Eun Seok Cho, Young-Sin Kim, Woncheoul Park and Heebal Kim. Population differentiated copy number variation between Eurasian wild boar and domesticated pig populations. Scientific Reports. 2023. DOI: 10.1038/s41598-022-22373-z. [LINK]


    21. 2022

  21. Youngseok Choi, Sojin Ahn, Myeongkyu Park, SaetByeol Lee, Seoae Cho and Heebal Kim. HGTree v2.0: a comprehensive database update for horizontal gene transfer (HGT) events detected by the tree-reconciliation method. Nucleic Acids Research. 2022. DOI: DOI: 10.1093/nar/gkac929. [LINK]


  22. Juwan Kim, Chul Lee, Byung June Ko, DongAhn Yoo, Sohyoung Won, Adam Phillippy, Olivier Fedrigo, Guojie Zhang, Kerstin Howe, Jonathan Wood, Richard Durbin, Giulio Formenti, Samara Brown, Lindsey Cantin, Claudio V. Mello, Seoae Cho, Arang Rhie, Heebal Kim and Erich D. Jarvis. False gene and chromosome losses in genome assemblies caused by GC content variation and repeats. Genome Biology. 2022. DOI: 10.1186/s13059-022-02765-0. [LINK]


  23. DongAhn Yoo, Junhee Park, Chul Lee, Injun Song, Young Ho Lee, Tery Yun, Hyemin Lee, Adriana Heguy, Jae Yong Han, Jeremy S Dasen, Heebal Kim and Myungin Baek. Little skate genome provides insights into genetic programs essential for limb-based locomotion. eLife. 2022. DOI: https://doi.org/10.7554/eLife.78345.. [LINK]


  24. Truc Ly Nguyen, Jorge Samuel Leon Magdaleno, Abdul Rajjak Shaikh, Kiattawee Choowongkomon, Vladimir Li, Youngho Lee and Heebal Kim. Designing a multi-epitope candidate vaccine by employing immunoinformatics approaches to control African swine fever spread. Journal of Biomolecular Structure and Dynamics. 2022. DOI: 10.1080/07391102.2022.2153922.. [LINK]


  25. Byung June Ko, Chul Lee, Juwan Kim, Arang Rhie, DongAhn Yoo, Kerstin Howe, Jonathan Wood, Seoae Cho, Samara Brown, Giulio Formenti, Erich D. Jarvis, Heebal Kim. Widespread false gene gains caused by duplication errors in genome assemblies. Genome Biology. 2022. DOI: 10.1186/s13059-022-02764-1. [LINK]


  26. Hyaekang Kim, Soomin Jeon, Jina Kim, Donghyeok Seol, Jinchul Jo, Seoae Cho, and Heebal Kim. Investigation of memory-enhancing effects of Streptococcus thermophilus EG007 in mice and elucidating molecular and metagenomic characteristics using Nanopore sequencing. Scientific Reports. 2022. DOI: 10.1038/s41598-022-14837-z. [LINK]


  27. Vladimir Li, Chul Lee, DongAhn Yoo, Seoae Cho, and Heebal Kim. In silico SARS-CoV-2 vaccine development for Omicron strain using reverse vaccinology. Genes & Genomics. 2022. DOI: 10.1007/s13258-022-01255-8. [LINK]


  28. Jaehoon Jung, and Heebal Kim. Shared genetic etiology and antagonistic relationship of plasma renin activity and systolic blood pressure in a Korean cohorts. Genomics. 2022. DOI: 10.1016/j.ygeno.2022.110334. [LINK]


  29. Donghyeok Seol, Jin Soo Lim, Samsun Sung, Young Ho Lee, Misun Jeong, Seoae Cho, Woori Kwak, and Heebal Kim. Microbial Identification Using rRNA Operon Region: Database and Tool for Metataxonomics with Long-Read Sequence. Microbiology spectrum. 2022. DOI: 10.1128/spectrum.02017-21. [LINK]


  30. Truc Ly Nguyen, Youngho Lee, and Heebal Kim. Immunogenic Epitope-Based Vaccine Prediction from Surface Glycoprotein of MERS-CoV by Deploying Immunoinformatics Approach. International Journal of Peptide Research and Therapeutics. 2022. DOI: 10.1007/s10989-022-10382-5. [LINK]


  31. Soomin Jeon, Hyaekang Kim, Jina Kim, Jinchul Jo, Donghyeok Seol, Youngseok Choi, Seoae Cho, and Heebal Kim. Positive effect on cognitive ability of Lactobacillus acidophilus EG004 in healthy mouse and fecal microbiome analysis using full-length 16S-23S rRNA metagenome sequencing. Microbiology spectrum. 2022. DOI: https://doi.org/10.1128/spectrum.01815-21. [LINK]


    32. 2021

  32. Taehyung Kwon, Kwondo Kim, Kelsey Caetano-Anolles, Samsun Sung, Seoae Cho, Choongwon Jeong, Olivier Hanotte, and Heebal Kim. Mitonuclear incompatibility as a hidden driver behind the genome ancestry of African admixed cattle. BMC Biology. 2021. DOI: -. [LINK]


  33. Soomin Jeon, Hyaekang Kim, Youngseok Choi, Seoae Cho, Minseok Seo and Heebal Kim. Complete Genome Sequence of the Newly Developed Lactobacillus acidophilus Strain With Improved Thermal Adaptability. Frontiers in Microbiology. 2021. DOI: 10.3389/fmicb.2021.697351. [LINK] [VIDEO]


  34. Clémentine Charton, Dong-Jae Youm, Byung June Ko, Donghyeok Seol, Bongsang Kim, Han-Ha Chai, Dajeong Lim and Heebal Kim. The transcriptomic blueprint of molt in rooster using various tissues from Ginkkoridak (Korean long-tailed chicken). BMC Genomics. 2021. DOI: 10.1186/s12864-021-07903-9. [LINK]


  35. Soyeon Bae, Vladimir Li, Juyong Hong, Jin Nam Kim, and Heebal Kim. Phylogenetic and evolutionary analysis of foot-and-mouth disease virus A/ASIA/Sea-97 lineage. Virus Genes. 2021. DOI: 10.1007/s11262-021-01848-7. [LINK] [VIDEO]


  36. Jisung Jang, Kwondo Kim, Young Ho Lee, Heebal Kim. Population differentiated copy number variation of Bos taurus, Bos Indicus and their African hybrids. BMC Genomics. 2021. DOI: 10.1186/s12864-021-07808-7. [LINK] [VIDEO]


  37. Arang Rhie, Shane A. McCarthy, Olivier Fedrigo, Joana Damas, Giulio Formenti, Sergey Koren, Marcela Uliano-Silva, William Chow, Arkarachai Fungtammasan, Juwan Kim, Chul Lee, Byung June Ko, Mark Chaisson, Gregory L. Gedman, Lindsey J. Cantin, Francoise Thibaud-Nissen, Leanne Haggerty, Iliana Bista, Michelle Smith, Bettina Haase, Jacquelyn Mountcastle, Sylke Winkler, Sadye Paez, Jason Howard, Sonja C. Vernes, Tanya M. Lama, Frank Grutzner, Wesley C. Warren, Christopher N. Balakrishnan, Dave Burt, Julia M. George, Matthew T. Biegler, David Iorns, Andrew Digby, Daryl Eason, Bruce Robertson, Taylor Edwards, Mark Wilkinson, George Turner, Axel Meyer, Andreas F. Kautt, Paolo Franchini, H. William Detrich III, Hannes Svardal, Maximilian Wagner, Gavin J. P. Naylor, Martin Pippel, Milan Malinsky, Mark Mooney, Maria Simbirsky, Brett T. Hannigan, Trevor Pesout, Marlys Houck, Ann Misuraca, Sarah B. Kingan, Richard Hall, Zev Kronenberg, Ivan Sović, Christopher Dunn, Zemin Ning, Alex Hastie, Joyce Lee, Siddarth Selvaraj, Richard E. Green, Nicholas H. Putnam, Ivo Gut, Jay Ghurye, Erik Garrison, Ying Sims, Joanna Collins, Sarah Pelan, James Torrance, Alan Tracey, Jonathan Wood, Robel E. Dagnew, Dengfeng Guan, Sarah E. London, David F. Clayton, Claudio V. Mello, Samantha R. Friedrich, Peter V. Lovell, Ekaterina Osipova, Farooq O. Al-Ajli, Simona Secomandi, Heebal Kim, Constantina Theofanopoulou, Michael Hiller, Yang Zhou, Robert S. Harris, Kateryna D. Makova, Paul Medvedev, Jinna Hoffman, Patrick Masterson, Karen Clark, Fergal Martin, Kevin Howe, Paul Flicek, Brian P. Walenz, Woori Kwak, Hiram Clawson, Mark Diekhans, Luis Nassar, Benedict Paten, Robert H. S. Kraus, Andrew J. Crawford, M. Thomas P. Gilbert, Guojie Zhang, Byrappa Venkatesh, Robert W. Murphy, Klaus-Peter Koepfli, Beth Shapiro, Warren E. Johnson, Federica Di Palma, Tomas Marques-Bonet, Emma C. Teeling, Tandy Warnow, Jennifer Marshall Graves, Oliver A. Ryder, David Haussler, Stephen J. O’Brien, Jonas Korlach, Harris A. Lewin, Kerstin Howe, Eugene W. Myers, Richard Durbin, Adam M. Phillippy & Erich D. Jarvis. Towards complete and error-free genome assemblies of all vertebrate species. Nature. 2021. DOI: 10.1038/s41586-021-03451-0. [LINK]


  38. Soyeon Bae, Sohyoung Won, Heebal Kim. Selection and evaluation of bi-allelic autosomal SNP markers for paternity testing in Koreans. International Journal of Legal Medicine. International Journal of Legal Medicine. 2021. DOI: 10.1007/s00414-020-02495-7. [LINK] [VIDEO]


  39. Bo-Hye Nam, Hyaekang Kim, Donghyeok Seol, Heebal Kim, Eun Soo Noh, Eun Mi Kim, Jae Koo Noh, Young-Ok Kim, Jung Youn Park and Woori Kwak. Genotyping-by-Sequencing of the regional Pacific abalone (Haliotis discus) genomes reveals population structures and patterns of gene flow. PLoS ONE. 2021. DOI: 10.1371/journal.pone.0247815. [LINK] [VIDEO]


  40. Juwan Kim, Chul Lee, DongAhn Yoo and Heebal Kim. Genetic Adaptations in Mudskipper and Tetrapod Give Insights into Their Convergent Water-to-Land Transition. Animals. 2021. DOI: 10.3390/ani11020584. [LINK] [VIDEO]


    41. 2020

  41. Jina Kim, Hyaekang Kim, Soomin Jeon, Jinchul Jo, Younghoon Kim and Heebal Kim. Synergistic Antibacterial Effects of Probiotic Lactic Acid Bacteria with Curcuma longa Rhizome Extract as Synbiotic against Cutibacterium acnes. Applied sciences. 2020. DOI: 10.3390/app10248955. [LINK] [VIDEO]


  42. Hyeonju Ahn, Donghyeok Seol, Seoae Cho, Heebal Kim and Woori Kwak. Enhanced Symbiotic Characteristics in Bacterial Genomes with the Disruption of rRNA Operon. Biology. 2020. DOI: 10.3390/biology9120440. [LINK] [VIDEO]


  43. Deivendran Rengaraj, Sohyoung Won, Jong Won Han, DongAhn Yoo, Heebal Kim and Jae Yong Han. Whole-Transcriptome Sequencing-Based Analysis of DAZL and Its Interacting Genes during Germ Cells Specification and Zygotic Genome Activation in Chickens. International Journal of Molecular Sciences. 2020. DOI: 10.3390/ijms21218170. [LINK]


  44. Kwondo Kim, Taehyung Kwon, Tadelle Dessie, DongAhn Yoo, Okeyo Ally Mwai, Jisung Jang, Samsun Sung, SaetByeol Lee, Bashir Salim, Jaehoon Jung, Heesu Jeong, Getinet Mekuriaw Tarekegn, Abdulfatai Tijjani, Dajeong Lim, Seoae Cho, Sung Jong Oh, Hak-Kyo Lee, Jaemin Kim, Choongwon Jeong, Stephen Kemp, Olivier Hanotte, and Heebal Kim. The mosaic genome of indigenous African cattle as a unique genetic resource for African pastoralism. Nature Genetics. 2020. DOI: 10.1038/s41588-020-0694-2. [LINK] [VIDEO]


  45. Bonggyu Min, Dongahn Yoo, Youngho Lee, Minseok Seo and Heebal Kim. Complete genomic analysis of Enterococcus faecium heat-resistant strain developed by Two-step Adaptation Laboratory Evolution method. Frontiers in Bioengineering and Biotechnology. 2020. DOI: 10.3389/fbioe.2020.00828. [LINK] [VIDEO]


  46. Hyaekang Kim, Taehyun Kim, Jaeku Kang, Younghoon Kim, Heebal Kim. Is Lactobacillus Gram-Positive? A Case Study of Lactobacillus iners. Microorganisms. 2020. DOI: 10.3390/microorganisms8070969. [LINK] [VIDEO]


  47. Soo-Jin Kim, Jung-Woo Ha, Heebal Kim. Genome-Wide Identification of Discriminative Genetic Variations in Beef and Dairy Cattle via an Information-Theoretic Approach. Genes. 2020. DOI: 10.3390/genes11060678. [LINK] [VIDEO]


  48. Bonggyu Min, Kkotnim Kim, Vladimir Li, Seoae Cho and Heebal Kim. Changes in cell membrane fatty acid composition of Streptococcus thermophilus in response to gradually increasing heat temperature. Journal of Microbiology and Biotechnology. 2020. DOI: 10.4014/jmb.1912.12053. [LINK] [VIDEO]


  49. Woori Kwak, Young-Hyun Han, Donghyeok Seol, Hyaekang Kim, Hyeonju Ahn, Misun Jeong, Jaeku Kang, Heebal Kim and Tae Hyun Kim. Complete Genome of Lactobacillus iners KY Using Flongle Provides Insight Into the Genetic Background of Optimal Adaption to Vaginal Econiche. Frontiers in Microbiology. 2020. DOI: 10.3389/fmicb.2020.01048. [LINK]


  50. Sohyoung Won, Jong-Eun Park, Ju-Hwan Son, Seung-Hwan Lee, Byeong Ho Park, Mina Park, Won-Chul Park, Han-Ha Chai, Heebal Kim, Jungjae Lee and Dajeong Lim. Genomic Prediction Accuracy Using Haplotypes Defined by Size and Hierarchical Clustering based on Linkage Disequilibrium. Frontiers in Genetics. 2020. DOI: 10.3389/fgene.2020.00134. [LINK] [VIDEO]


    51. 2019

  51. Donghyeok Seol, Soyun Jhang, Hyaekang Kim, Se-Young Kim, HyoSun Kwak, Soon-Han Kim, Woojung Lee, Sewook Park, Heebal Kim, Seoae Cho, and Woori Kwak. Accurate and Strict Identification of Probiotic Species Based on Coverage of Whole-metagenome Shotgun Sequencing Data. Frontiers in Microbiology. 2019. DOI: 10.3389/fmicb.2019.01683. [LINK]


  52. Krishnamoorthy Srikanth, Nam-Young Kim, WonCheoul Park, Jae-Min Kim, Kwon-Do Kim, Kyung-Tai Lee, Ju-Hwan Son, Han-Ha Chai, Jung-Woo Choi, Gul-Won Jang, Heebal Kim, Youn-Chul Ryu, Jin-Wu Nam, Jong-Eun Park, Jun-Mo Kim & Dajeong Lim. Comprehensive genome and transcriptome analyses reveal genetic relationship, selection signature, and transcriptome landscape of small-sized Korean native Jeju horse. Scientific Reports. 2019. DOI: 10.1038/s41598-020-74979-w. [LINK]


  53. Donghyeok Seol, Byung June Ko, Bongsang Kim, Han-Ha Chai , Dajeong Lim and Heebal Kim. Identification of Copy Number Variation in Domestic Chicken Using Whole-Genome Sequencing Reveals Evidence of Selection in the Genome. Animals. 2019. DOI: 10.3390/ani9100809. [LINK]


  54. Minyu Song, Hyaekang Kim, Woori Kwak, Won Seo Park, Jayeon Yoo, Han Byul Kang, Jin-Hyoung Kim, Sun-Moon Kang, Hoa Van Ba, Bu-Min Kim, Mi-Hwa Oh, Heebal Kim, Jun-Sang Ham. Expression and Purification of Extracellular Solute-Binding Protein (ESBP) in Escherichia coli, the Extracellular Protein Derived from Bifidobacterium longum KACC 91563. Food Science of Animal Resources. 2019. DOI: 10.1093/ps/82.6.952.. [LINK]


  55. Sohyun Bang, DongAhn Yoo, Soo-Jin Kim, So Yun Jhang, Seoae Cho, and Heebal Kim. Establishment and evaluation of prediction model for multiple disease classification based on gut microbial data. Scientific Reports. 2019. DOI: 10.1038/s41598-019-46249-x. [LINK]


  56. Sol Moe Lee, Jae Wook Hyeon, Soo-Jin Kim, Heebal Kim, Ran Noh, Seonghan Kim, Yeong Seon Lee & Su Yeon Kim. Sensitivity and specificity evaluation of multiple neurodegenerative proteins for Creutzfeldt-Jakob disease diagnosis using a deep-learning approach. Prion. 2019. DOI: 10.1080/19336896.2019.1639482. [LINK]


  57. Lee Sol Moe,  Hyeon Jae Wook,  Kim Soo-Jin,  Kim Heebal,  Noh Ran,  Kim Seonghan,  Lee Yeong Seon,  Kim Sung Soon,  Kim Su Yeon. Deep learning-based pre-mortem diagnostic methods for sporadic Creutzfeldt-Jakob disease using multiple CSF biomarkers. Prion. 2019. DOI: 10.1080/19336896.2019.1639482. [LINK]


  58. Kwondo Kim, Sohyun Bang, DongAhn Yoo, Heebal Kim, Shunsuke Suzuki. De novo emergence and potential function of human-specific tandem repeats in brain-related loci. Human genetics. 2019. DOI: 10.1007/s00439-019-02017-5. [LINK]


  59. Soo-Jin Kim, Jung-Woo Ha, Heebal Kim, Byoung-TakZhang. Bayesian evolutionary hypernetworks for interpretable learning from high-dimensional data. Applied Soft Computing. 2019. DOI: 10.1016/j.asoc.2019.05.004. [LINK]


  60. Bo-Hye Nam, DongAhn Yoo, Young-Ok Kim, Jung Youn Park, Younhee Shin, Ga-hee Shin, Chan-Il Park, Heebal Kim, and Woori Kwak. Whole genome sequencing reveals the impact of recent artificial selection on red sea bream reared in fish farms. Scientific Reports. 2019. DOI: 10.1038/s41598-020-58614-2. [LINK]


  61. Sol Moe Lee, Sung Soon Kim, Heebal Kim, Su Yeon Kim. THERPA v2: an update of a small molecule database related to prion protein regulation and prion disease progression. Prion. 2019. DOI: 10.1080/19336896.2019.1689789. [LINK]


  62. Valerie Diane V. Valeriano, Ju Kyoung Oh, Bernadette B. Bagon, Heebal Kim, Dae-Kyung Kang. Comparative genomic analysis of Lactobacillus mucosae LM1 identifies potential niche-specific genes and pathways for gastrointestinal adaptation. Genomics. 2019. DOI: 10.1016/j.ygeno.2017.12.009. [LINK]


  63. Joon Yoon, Heebal Kim. Multi-tissue observation of the long non-coding RNA effects on sexually biased gene expression in cattle. AJAS. 2019. DOI: 10.5713/ajas.18.0516. [LINK]


    64. 2018

  64. Mengistie Taye, Wonseok Lee, Kelsey Caetano-Anolles, Tadelle Dessie, Seoae Cho, Sung Jong Oh, Hak-Kyo Lee and Heebal Kim. Exploring the genomes of East African Indicine cattle breeds reveals signature of selection for tropical environmental adaptation traits. Cogent Food & Agriculture. 2018. DOI: 10.3389/fgene.2013.00035. [LINK]


  65. Jung Youn Park, Kwondo Kim, Hawsun Sohn, Hyunwoo Kim, Yong-Rock An, Jung-Ha Kang, Eun Mi Kim, Woori Kwak, Chul Lee, DongAhn Yoo, Jaehoon Jung, Samsun Sung, Joon Yoon, Heebal Kim. Deciphering the evolutionary signatures of pinnipeds using novel genome sequences: The first genomes of Phoca largha, Callorhinus ursinus, and Eumetopias jubatus. Scientific Reports. 2018. DOI: 10.1038/s41598-018-34758-0. [LINK]


  66. Young Sun Hwang, Minseok Seo, Sang Kyung Kim, Sohyun Bang, Heebal Kim, Jae Yong Han. Zygotic gene activation in the chicken occurs in two waves, the first involving only maternally derived genes. eLife. 2018. DOI: 10.7554/eLife.39381. [LINK]


  67. Bo-Hye Nam, Jisung Jang , Kelsey Caetano-Anolles, Young-Ok Kim, Jung Youn Park, Hawsun Sohn, Sook Hee Yoon, Heebal Kim, Woori Kwak. Microbial community and functions associated with digestion of algal polysaccharides in the visceral tract of Haliotis discus hannai: Insights from metagenome and metatranscriptome analysis. PLoS ONE. 2018. DOI: 10.1371/journal.pone.0205594. [LINK]


  68. Min-Jung Kwak, Hyun Gi Kong, Kihyuck Choi, Soon-Kyeong Kwon, Ju Yeon Song, Jidam Lee, Pyeong An Lee, Soo Yeon Choi, Minseok Seo, Hyoung Ju Lee, Eun Joo Jung, Hyein Park, Nazish Roy, Heebal Kim, Myeong Min Lee, Edward M Rubin, Seon-Woo Lee, Jihyun F Kim. Rhizosphere microbiome structure alters to enable wilt resistance in tomato. Nature Biotechnology. 2018. DOI: 10.1038/nbt.4232. [LINK]


  69. Sook Hee Yoon, Wonseok Lee, Hyeonju Ahn, Kelsey Caetano-Anolles, Kyoung-Do Park, Heebal Kim. Origin and spread of Thoroughbred racehorses inferred from complete mitochondrial genome sequences: Phylogenomic and Bayesian coalescent perspectives. PLoS ONE. 2018. DOI: 10.1371/journal.pone.0203917. [LINK]


  70. Han Young Chung, Byungho Lee, Eun Jung Na, Kyu-Ho Lee, Sangryeol Ryu, Hyunjin Yoon, Ju-Hoon Lee, Hyeun Bum Kim, Heebal Kim, Hee Gon Jeong, Bong-Soo Kim, and Sang Ho Choi. Potential Survival and Pathogenesis of a Novel Strain, Vibrio parahaemolyticus FORC_022, Isolated From a Soy Sauce Marinated Crab by Genome and Transcriptome Analyses. Frontiers in Microbiology. 2018. DOI: 10.3389/fmicb.2018.01504. [LINK]


  71. Kelsey Caetano-Anolles, Kwondo Kim, Woori Kwak, Samsun Sung, Heebal Kim, Bong-Hwan Choi, and Dajeong Lim. Genome sequencing and protein domain annotations of Korean Hanwoo cattle identify Hanwoo-specific immunity-related and other novel genes. BMC Genetics. 2018. DOI: 10.1186/s12863-018-0623-x. [LINK]


  72. Sol Moe Lee, Wonseok Lee, Yeong Seon Lee, Jin-Soo Yoo, Soo-Jung Park, Heebal Kim &Su Yeon Kim. THERPA: a small molecule database related to prion protein regulation and prion disease progression. Prion. 2018. DOI: 10.1080/19336896.2018.1461519. [LINK]


  73. Jisung Jang, Sook Hee Yoon, Wonseok Lee, Jihyun Yu, Joon Yoon, Seunghyun, Shim, Heebal Kim. Time-calibrated phylogenomics of the porcine epidemic diarrhea virus: genome-wide insights into the spatio-temporal dynamics. Genes & Genomics. 2018. DOI: 10.1007/s13258-018-0686-0. [LINK]


  74. Hyaekang Kim, Woori Kwak, Sook Hee Yoon, Dae-Kyung Kang, Heebal Kim. Horizontal gene transfer of Chlamydia: Novel insights from tree reconciliation. PLoS ONE. 2018. DOI: 10.1371/journal.pone.0195139. [LINK]


  75. Dongsung Jang, Joon Yoon, Mengistie Taye, Wonseok Lee, Taehyung Kwon, Seunghyun Shim, Heebal Kim. Multivariate genome-wide association studies on tenderness of Berkshire and Duroc pig breeds. Genes & Genomics. 2018. DOI: 10.1007/s13258-018-0672-6. [LINK]


  76. Young Sun Hwang, Minseok Seo, Hee Jung Choi, Sang Kyung Kim, Heebal Kim, Jae Yong Han. The first whole transcriptomic exploration of pre-oviposited early chicken embryos using single and bulked embryonic RNA-sequencing. GigaScience. 2018. DOI: 10.1093/gigascience/giy030. [LINK]


  77. Kwondo Kim, Jaehoon Jung, Kelsey Caetano-Anolles, Samsun Sung, DongAhn Yoo, Bong-Hwan Choi, Hyung-Chul Kim, Jin-Young Jeong, Yong-Min Cho, Eung-Woo Park, Tae-Jeong Choi, Byoungho Park, Dajeong Lim, Heebal Kim. Artificial selection increased body weight but induced increase of runs of homozygosity in Hanwoo cattle. PLoS ONE. 2018. DOI: 10.1371/journal.pone.0193701. [LINK]


  78. Young Sun Hwang, Minseok Seo, Bo Ram Lee, Hong Jo Lee, Young Hyun Park, Sang Kyung Kim, Hyung Chul Lee, Hee Jung Choi, Joon Yoon, Heebal Kim, Jae Yong Han. The transcriptome of early chicken embryos reveals signaling pathways governing rapid asymmetric cellularization and lineage segregation. Development. 2018. DOI: 10.1242/dev.157453. [LINK]


  79. Young Sun Hwang, Minseok Seo, Sohyun Bang, Heebal Kim, Jae Yong Han. Transcriptional and translational dynamics during maternal-to-zygotic transition in early chicken development. FASEB journal. 2018. DOI: 10.1096/fj.201700955R. [LINK]


  80. Chul Lee, Heesu Jeong, DongAhn Yoo, Eun Bae Kim, Bo-Hye Nam, Heebal Kim. Coelacanth-specific adaptive genes give insights into primitive evolution for water-to-land transition of tetrapods. Marine Genomics. 2018. DOI: 10.1016/j.margen.2017.12.004. [LINK]


  81. Hyeonju Ahn,Chul Lee,Bo-Hye Nam,Eun Bae Kim,Kelsey Caetano-Anolles,Heebal Kim. Selective pressure on the protein-coding genes of the pufferfish is correlated with phenotypic traits. Marine Genomics. 2018. DOI: 10.1016/j.margen.2017.11.015. [LINK]


  82. Jaehoon Jung, Kwondo Kim, DongAhn Yoo, Chanho Lee, Jungsun Kang, Kyungjin Cho, Dae-Kyung Kang, Woori Kwak, Sook Hee Yoon, Hawsun Sohn, Heebal Kim, Seoae Cho. Comparative genomic analysis of Lactobacillus plantarum GB-LP4 and identification of evolutionarily divergent genes in high-osmolarity environment. Genes & Genomics. 2018. DOI: 10.1007/s13258-017-0555-2. [LINK]


  83. Mengistie Taye, Joon Yoon, Tadelle Dessie, Seoae Cho, Sung Jong Oh, Hak-Kyo Lee, Heebal Kim. Deciphering signature of selection affecting beef quality traits in Angus cattle. Genes & Genomics. 2018. DOI: 10.1007/s13258-017-0610-z. [LINK]


    84. 2017

  84. Soomin Jeon, Jaehoon Jung, Kwondo Kim, DongAhn Yoo, Chanho Lee, Jungsun Kang, Kyungjin Cho, Dae-Kyung Kang, Woori kwak, Sook Hee Yoon, Heebal Kim, Seoae Cho. Comparative genome analysis of Lactobacillus plantarum GB-LP3 provides candidates of survival-related genetic factors. Infection, Genetics and Evolution. 2017. DOI: 10.1016/j.meegid.2017.12.025. [LINK]


  85. Wonseok Lee, Donghyn Shin, Mengistie Taye, Chul Lee, Heebal Kim, Hak-Kyo Lee, Kyung-Do Park. Analysis of cross-population differentiation between Thoroughbred and Jeju horses. Asian-Australasian Journal of Animal Sciences. 2017. DOI: 10.5713/ajas.17.0460. [LINK]


  86. Taehyung Kwon, Joon Yoon, Jaeyoung Heo, Wonseok Lee, and Heebal Kim. Tracing the breeding farm of domesticated pig using feature selection (Sus scrofa). AJAS. 2017. DOI: 10.5713/ajas.17.0561. [LINK]


  87. Jihyun Yu, Bo-Hye Nam, Joon Yoon, Eun Bae Kim, Jung Youn Park, Heebal Kim, Sook Hee Yoon. Tracing the spatio-temporal dynamics of endangered fin whales (Balaenoptera physalus) within baleen whale (Mysticeti) lineages: A mitogenomic perspective. Genetica. 2017. DOI: 10.1007/s10709-017-9988-4. [LINK]


  88. DongAhn Yoo, Bernadette B. Bagon, Valerie Diane V. Valeriano, Ju Kyoung Oh, Heebal Kim, Seoae Cho, Dae-Kyung Kang. Complete Genome Analysis of Lactobacillus fermentum SK152 from Kimchi Reveals Genes Associated with its Antimicrobial Activity. FEMS Microbiology Letters. 2017. DOI: 10.1093/femsle/fnx185. [LINK]


  89. Minseok Seo, Jaeyoung Heo, Joon Yoon, Se-Young Kim, Yoon-Mo Kang, Jihyun Yu, Seoae Cho, Heebal Kim. Methanobrevibacter Attenuation via Probiotic Intervention Reduces Flatulence in Adult Human: A Non-Randomised Paired-Design Clinical Trial of Efficacy. PLoS ONE. 2017. DOI: 10.1371/journal.pone.0184547. [LINK]


  90. Woncheoul Park, Deivendran Rengaraj, Dong-Yong Kil, Heebal Kim, Hak-Kyo Lee, Ki-Duk Song. RNA-seq analysis of the kidneys of broiler chickens fed diets containing different concentrations of calcium. Scientific Reports. 2017. DOI: 10.1038/s41598-017-11379-7. [LINK]


  91. Mengistie Taye, Wonseok Lee, Soomin Jeon, Joon Yoon, Tadelle Dessie, Olivier Hanotte, Okeyo Ally Mwai, Stephen Kemp, Seoae Cho, Sung Jong Oh, Hak-Kyo Lee, Heebal Kim. Exploring evidence of positive selection signatures in cattle breeds selected for different traits. Mammalian Genome. 2017. DOI: 10.5808/gi.2008.6.1.032 . [LINK]


  92. DongAhn Yoo, Kwondo Kim, Hyaekang Kim, Seoae Cho, Jin Nam Kim, Dajeong Lim, Seog-Gyu Cho, Bong-Hwan Cho & Heebal Kim. The Genetic Origin of Short Tail in Endangered Korean Dog, DongGyeongi. Scientific Reports. 2017. DOI: 10.1038/s41598-017-10106-6. [LINK]


  93. Jihyun Yu, Sojin Ahn, Kwondo Kim, Kelsey Caetano-Anolles, Chanho Lee, Jungsun Kang, Kyungjin Cho, Sook Hee Yoon, Dae-Kyung Kang, Heebal Kim. Comparative genome analysis of Lactobacillus plantarum GB-LP1 isolated from traditional Korean fermented food. Journal of Molecular Microbiology and Biotechnology. 2017. DOI: 10.4014/jmb.1704.04005. [LINK]


  94. Mengistie Taye, Wonseok Lee, Kelsey Caetano-Anolles, Tadelle Dessie, Olivier Hanotte, Okeyo Ally Mwai, Stephen Kemp, Seoae Cho, Sung Jong Oh, Hak-Kyo Lee, Heebal Kim. Whole genome detection of signature of positive selection in African cattle reveals selection for thermotolerance. Animal Science Journal. 2017. DOI: 10.1111/asj.12851. [LINK]


  95. Sohyoung Won , Jaehoon Jung, Eungwoo Park, H. B Kim. Identification of genes related to intramuscular fat content of pigs using genome-wide association study. AJAS. 2017. DOI: 10.5713/ajas.18.0483. [LINK]


  96. Hyun-Jin Koo, Sojin Ahn, Han Young Chung, Suyeon Kim, Kwondo Kim, Sangryeol Ryu, Ju-Hoon Lee, Sang Ho Choi and Heebal Kim. Comparative genomic analysis reveals genetic features related to the virulence of Bacillus cereus FORC_013. Gut Pathogens. 2017. DOI: 10.1186/s13099-017-0175-z. [LINK]


  97. Soo-Jin Kim, Sojeong Ka, Jung-Woo Ha, Jaemin Kim, DongAhn Yoo, Kwondo Kim, Hak-Kyo Lee, Dajeong Lim, Seoae Cho, Olivier Hanotte, Ally Okeyo Mwai, Tadelle Dessie, Stephen Kemp and Sung Jong Oh and Heebal Kim. Cattle genome-wide analysis reveals genetic signatures in trypanotolerant N'Dama. BMC Genomics. 2017. DOI: 10.3389/fgene.2019.00442. [LINK]


  98. Bo-Hye Nam, Woori Kwak, Young-Ok Kim, Dong-Gyun Kim, Hee Jeong Kong, Woo-Jin Kim, Jeong-Ha Kang, Jung Youn Park, Cheul Min An, Ji-Young Moon, Choul Ji Park, Jae Woong Yu, Joon Yoon, Minseok Seo, Kwondo Kim, Duk Kyung Kim, SaetByeol Lee, Samsun Sung, Chul Lee, Younhee Shin, Myunghee Jung, Byeong-Chul Kang, Shin Ga-hee, Sojeong Ka, Kelsey Caetano-Anolles, Seoae Cho, Heebal Kim. Genome sequence of pacific abalone (Haliotis discus hannai): the first draft genome in family Haliotidae. GigaScience. 2017. DOI: 10.1093/gigascience/gix014. [LINK]


  99. Sook Hee Yoon, Jaemin Kim, Donghyun Shin, Seoae Cho, Woori Kwak, Hak-Kyo Lee, Kyoung-Do Park, Heebal Kim. Complete mitochondrial genome sequences of Korean native horse from Jeju Island: Uncovering the spatio-temporal dynamics. Molecular Biology Reports . 2017. DOI: 10.1007/s11033-017-4101-8. [LINK]


  100. Donghyun Shin, Chul Lee, Kyoung-Do Park, Heebal Kim, Kwang-hyeon Cho. Genome-association analysis of Korean Holstein milk traits using genomic estimated breeding value. Asian-Australasian Journal of Animal Sciences. 2017. DOI: 10.5713/ajas.15.0608. [LINK]


  101. Wonseok Lee, Mengistie Taye, Taehyung Kwon, Joon Yoon, Dongsung Jang,Shunsuke Suzuki, Heebal Kim. Identifying candidate positive selection genes in Korean imported pig breeds. Genes & Genomics. 2017. DOI: 10.1007/s13258-017-0534-7. [LINK]


  102. Gopalsamy Gnanasekaran, Eun Jung Na, Han Young Chung, Suyeon Kim, You-Tae Kim, Woori Kwak, Heebal Kim, Sangryeol Ryu, Sang Ho Choi, Ju-Hoon Lee. Genomic Insights and Its Comparative Analysis with Yersinia enterocolitica Reveals the Potential Virulence Determinants and Further Pathogenicity for Foodborne Outbreaks. J. Microbiol. Biotechnol. 2017. DOI: 10.4014/jmb.1611.11048. [LINK]


  103. Jaemin Kim, Olivier Hanotte, Okeyo Ally Mwai, Tadelle Dessie, Salim Bashir, Boubacar Diallo, Morris Agaba, Kwondo Kim, Woori Kwak, Samsun Sung, Minseok Seo, Hyeonsoo Jeong, Taehyung Kwon, Mengistie Taye, Ki-Duk Song, Dajeong Lim, Seoae Cho, Hyun-Jeong Lee, Duhak Yoon, Sung Jong Oh, Stephen Kemp, Hak-Kyo Lee and Heebal Kim. The genome landscape of indigenous African cattle. Genome Biology. 2017. DOI: 10.1186/s13059-017-1153-y. [LINK]


  104. Mengistie Taye, Jaemin Kim, Sook Hee Yoon, Wonseok Lee, Olivier Hanotte, Tadelle Dessie, Stephen Kemp, Okeyo Ally Mwai, Kelsey Caetano-Anolles, Seoae Cho, Sung Jong Oh, Hak-Kyo Lee and Heebal Kim. Whole genome scan reveals the genetic signature of African Ankole cattle breed and potential for higher quality beef. BMC Genetics. 2017. DOI: 10.1186/s12863-016-0467-1. [LINK]


    105. 2016

  105. Wonseok Lee, Sojin Ahn, Mengistie Taye, Samsun Sung, Hyun-Jeong Lee, Seoae Cho, and Heebal Kim. Detecting Positive Selection of Korean Native Goat Populations Using Next-Generation Sequencing. Molecules and Cells. 2016. DOI: 10.14348/molcells.2016.0219. [LINK]


  106. Chung Han Young,  Lee Kyu-Ho,  Ryu Sangryeol,  Yoon Hyunjin,  Lee Ju-Hoon,  Kim Hyeun Bum,  Kim Heebal,  Jeong Hee Gon, Choi Sang Ho,  Kim Bong-Soo. Genome Sequence of Bacillus cereus FORC_ 021, a Food- Borne Pathogen Isolated from a Knife at a Sashimi Restaurant. Journal of Microbiology and Biotechnology. 2016. DOI: 10.4014/jmb.1604.04094. [LINK]


  107. Sojin Ahn, Han Young Chung, Sooyeon Lim, Kwondo Kim, Suyeon Kim, Eun Jung Na, Kelsey Caetano-Anolles, Ju-Hoon Lee, Sangryeol Ryu, Sang Ho Choi and Heebal Kim. Complete genome of Vibrio parahaemolyticus FORC014 isolated from the toothfish. Gut Pathogens. 2016. DOI: 10.1186/s13099-016-0134-0. [LINK]


  108. Jaeyoung Heo, Minseok Seo, Hwanhee Park, Woon Kyu Lee, Le Luo Guan, Joon Yoon, Kelsey Caetano-Anolles, Hyeonju Ahn, Se-Young Kim, Yoon-Mo Kang, Seoae Cho & Heebal Kim. Gut microbiota Modulated by Probiotics and Garcinia cambogia Extract Correlate with Weight Gain and Adipocyte Sizes in High Fat-Fed Mice. Scientific Reports. 2016. DOI: 10.1038/srep33566. [LINK]


  109. Chae Jong Pyo,  Pajarillo Edward Alain B.,  Oh Ju Kyoung, Kim Heebal, Kang Dae-Kyung. Revealing the combined effects of lactulose and probiotic enterococci on the swine faecal microbiota using 454 pyrosequencing. Microbial Biotechnology. 2016. DOI: 10.1111/1751-7915.12370. [LINK]


  110. Sojeong Ka, Hyeonju Ahn, Minseok Seo, Heebal Kim, Jin Nam Kim, Hyun-Jeong Lee. Status of dosage compensation of X chromosome in bovine genome. Genetica. 2016. DOI: 10.1007/s10709-016-9912-3. [LINK]


  111. Sol Moe Lee, Myungguen Chung, Jae Wook Hyeon, Seok Won Jeong, Young Ran Ju, Heebal Kim, Jeongmin Lee. Genomic characteristics of genetic creutzfeldt-jakob disease patients with V180I mutation and associations with other neurodegenerative disorders. PLoS ONE. 2016. DOI: 10.1371/journal.pone.0157540. [LINK]


  112. Hyeonsoo Jeong, Kwondo Kim, Kelsey Caetano-Anolles, Heebal Kim, Byung-ki Kim, Jun-Koo Yi, Jae-Jung Ha, Seoae Cho & Dong Yep Oh. Whole genome sequencing of Gyeongbuk Araucana, a newly developed blue-egg laying chicken breed, reveals its origin and genetic characteristics. Scientific Reports. 2016. DOI: 10.1038/srep26484. [LINK]


  113. Suyeon Kim, Han Young Chung, Dong-Hoon Lee, Jong Gyu Lim, Se Keun Kim, Hye-Jin Ku, You-Tae Kim, Heebal Kim, Sangryeol Ryu, Ju-Hoon Lee, Sang Ho Choi. Complete genome sequence of Vibrio parahaemolyticus strain FORC_008, a foodborne pathogen from a flounder fish in South Korea. Pathogens and Disease. 2016. DOI: 10.1093/femspd/ftw044. [LINK]


  114. Jung Youn Park, Yong-Rock An, Chul-Min An, Jung-Ha Kang, Eun Mi Kim, Heebal Kim, Seoae Cho & Jaemin Kim. Evolutionary constraints over microsatellite abundance in larger mammals as a potential mechanism against carcinogenic burden. Scientific Reports. 2016. DOI: 10.1038/srep25246. [LINK]


  115. Hyeok-Joong Kang, In Kyu Lee, Min-Yu Piao, Chae-Won Kwak, Min Jeong Gu, Cheol Heui Yun, Hyun-Jin Kim, Hyeon-Ju Ahn, Hee-Bal Kim, Gyeom-Heon Kim, Soo-Ki Kim, Jong-Youl Ko, Jong K. Ha and Myunggi Baik. Effects of road transportation on metabolic and immunological responses in Holstein heifers. Animal Science Journal. 2016. DOI: 10.1111/asj.12604. [LINK]


  116. Minseok Seo, Kwondo Kim, Joon Yoon, Jin Young Jeong, Hyun-Jeong Lee, Seoae Cho & Heebal Kim. RNA-seq analysis for detecting quantitative trait-associated genes. Scientific Reports. 2016. DOI: 10.1038/srep24375. [LINK]


  117. Han Young Chung, Eun Jung Na, Kyu-Ho Lee, Sangryeol Ryu, Hyunjin Yoon, Ju-Hoon Lee, Hyeun Bum Kim, Heebal Kim, Sang Ho Choi, Bong-Soo Kim. Complete genome sequence of Vibrio parahaemolyticus FORC_023 isolated from raw fish storage water. Pathogens and Disease. 2016. DOI: 10.1093/femspd/ftw032. [LINK]


  118. Minseok Seo, Hyun-Jeong Lee, Kwondo Kim, Kelsey Caetano-Anolles, Jin Young Jeong, Sungkwon Park, Young Kyun Oh, Seoae Cho, Heebal Kim. Characterizing milk production related genes in Holstein using RNA-seq. AJAS. 2016. DOI: 10.1186/s12864-017-3581-1. [LINK]


  119. Minseok Seo, Kelsey Caetano-Anolles, Sandra Rodriguez-Zas, Sojeong Ka, Jin Young Jeong, Sungkwon Park, Min Ji Kim, Whan-Gook Nho, Seoae Cho, Heebal Kim, and Hyun-Jeong Lee. Comprehensive identification of sexually dimorphic genes in diverse cattle tissues using RNA-seq. BMC Genomics. 2016. DOI: 10.1186/s12864-016-2400-4. [LINK]


  120. Hyeonsoo Jeong, Samsun Sung, Taehyung Kwon, Minseok Seo, Kelsey Caetano-Anolles, Sang Ho Choi, Seoae Cho, Arshan Nasir, and Heebal Kim. HGTree: database of horizontally transferred genes determined by tree reconciliation. Nucleic Acids Research. 2016. DOI: 10.1093/nar/gkv1245. [LINK]


  121. Young-Sup Lee, Donghyun Shin, Wonseok Lee, Mengistie Taye, Kwanghyun Cho, Kyoung-Do Park, Heebal Kim. The prediction of the expected current selection coefficient of single nucleotide polymorphism (SNP) associated with Ho lstein milk yield, fat and protein contents. AJAS. 2016. DOI: 10.5713/ajas.14.0337. [LINK]


    122. 2015

  122. Jae Yeon Hwang, Gwi-Deuk Jin, Jongbin Park, Heebal Kim, Chang-Kyu Lee, Woori Kwak, Bo-Hye Nam, Cheul Min An, Jung Youn Park, Kyu-Hyun Park, Chul-Sung Huh, Eun Bae Kim. Complete genome sequence and SNPs of Raja pulchra (Rajiformes, Rajidae) mitochondria. Mitochondrial DNA. 2015. DOI: 10.3109/19401736.2015.1060467. [LINK]


  123. Woori Kwak, Kwondo Kim, Chul Lee, Chanho Lee, Jungsun Kang, Kyungjin Cho, Sook Hee Yoon, Dae-Kyung Kang, Heebal Kim, Jaeyoung Heo, Seoae Cho. Comparative analysis of the complete genome of Lactobacillus Plantarum GB-LP2 and potential candidate genes for host immune system enhancement. Journal of Microbiology and Biotechnology. 2015. DOI: 10.4014/jmb.1510.10081. [LINK]


  124. HyoYoung Kim, Kelsey Caetano-Anolles, Minseok Seo, Young-jun Kwon, Seoae Cho, Kangseok Seo, and Heebal Kim. Prediction of Genes Related to Positive Selectio n Using Whole-Genome Resequencing in Three Commercial Pig Breeds. Genomics & Informatics. 2015. DOI: 10.5808/GI.2015.13.4.137. [LINK]


  125. Mingoo Kim, Heewon Seo, Yohan Choi, Inkyu Yoo, Minseok Seo, Chang-Kyu Lee, Heebal Kim, Hakhyun Ka. Analysis of Stage-Specific Gene Expression Profiles in the Uterine Endometrium during Pregnancy in Pigs. PLoS ONE. 2015. DOI: 10.1371/journal.pone.0143436. [LINK]


  126. Mingoo Kim, Heewon Seo, Yohan Choi, Inkyu Yoo, Minseok Seo, Chang-Kyu Lee, Heebal Kim, Hakhyun Ka. Analysis of Global Gene Expression Profiles in the Uterine Endometrium During Pregnancy in Pigs. Biology of Reproduction. 2015. DOI: 10.1371/journal.pone.0143436. [LINK]


  127. Lee Dong-Hoon,  Kim Hye Rim, Chung Han Young, Lim Jong Gyu, Kim Suyeon, Kim Se Keun, Ku Hye-Jin, Kim Heebal,  Ryu Sangryeol,  Choi Sang Ho,  Lee Ju-Hoon. Complete genome sequence of Bacillus cereus FORC_005, a food-borne pathogen from the soy sauce braised fish-cake with quail-egg. Standards in Genomic Sciences. 2015. DOI: 10.1186/s40793-015-0094-x.. [LINK]


  128. Sunjin Moon, Jin Woo Lee, Donghyun Shin, Kwang-Yun Shin, Jun Kim, Ik-Young Choi, Jaemin Kim, Heebal Kim. A Genome-wide Scan for Selective Sweeps in Racing Horses. Asian-Australasian Journal of Animal Sciences. 2015. DOI: 10.5713/ajas.14.0696. [LINK]


  129. Kwondo Kim, Minseok Seo, Hyunsung Kang, Seoae Cho, Heebal Kim, Kang-Seok Seo. Application of LogitBoost Classifier for Traceability Using SNP Chip Data. PLoS ONE. 2015. DOI: 10.1371/journal.pone.0139685. [LINK]


  130. Kelsey Caetano-Anolles, Minseok Seo, Sandra Rodriguez-Zas, Jae-Don Oh, Jae Yong Han, Kichoon Lee, Tae Sub Park, Sangsu Shin, Zhang Jiao Jiao, Mrinmoy Ghosh, Dong Kee Jeong, Seoae Cho, Heebal Kim, Ki-Duk Song, Hak-Kyo Lee. Comprehensive Identification of Sexual Dimorphism-Associated Differentially Expressed Genes in Two-Way Factorial Designed RNA-Seq Data on Japanese Quail (Coturnix coturnix japonica). PLoS ONE. 2015. DOI: 10.1371/journal.pone.0139324. [LINK]


  131. Chung Han Young,  Kim You-Tae,  Kim Suyeon,  Na Eun Jung,  Ku Hye-Jin,  Lee Keun Hwa,  Heo Sang Taek,  Ryu Sangryeol,  Kim Heebal,  Choi Sang Ho,  Lee Ju-Hoon. Comparative genomic analysis of mitochondrial protein-coding genes in Veneroida clams: Analysis of superfamily-specific genomic and evolutionary features. Marine Genomics. 2015. DOI: 10.1016/j.margen.2015.08.004. [LINK]


  132. Hyeonsoo Jeong, Ki-Duk Song, Minseok Seo, Kelsey Caetano-Anolles, Jaemin Kim, Woori Kwak, Jae-don Oh, EuiSoo Kim, Dong Kee Jeong, Seoae Cho, Heebal Kim, Hak-Kyo Lee. Exploring evidence of positive selection reveals genetic basis of meat quality traits in Berkshire pigs through whole genome sequencing. BMC Genetics. 2015. DOI: 10.1186/s12863-015-0265-1. [LINK]


  133. Sooyeon Lim, SooHyun Cho, Kelsey Caetano-Anolles, Seok Geun Jeong, Mi Hwa Oh, Beom Young Park, Hyun Jung Kim, Seoae Cho, Sang Ho Choi, Sangryeol Ryu, Ju-Hoon Lee, Heebal Kim, Jun Sang Ham. Developmental Dynamic Analysis of the Excreted Microbiome of Chickens Using Next-Generation Sequencing. Journal of Molecular Microbiology and Biotechnology. 2015. DOI: 10.1159/000430865. [LINK]


  134. Dong-Hyun Shin, Jin Woo Lee, Jong-Eun Park, Ik-Young Choi, Hee-Seok Oh, Hyeon Jeong Kim, Heebal Kim. Multiple Genes Related to Muscle Identified through a Joint Analysis of a Two-stage Genome-wide Association Study for Racing Performance of 1,156 Thoroughb reds. Asian-Australasian Journal of Animal Sciences. 2015. DOI: 10.5713/ajas.14.0008. [LINK]


  135. Hyeongmin Kim, Ki-Duk Song, Hyeon Jeong Kim, WonCheoul Park, Jaemin Kim, Taeheon Lee, Dong-Hyun Shin, Woori Kwak, Young-jun Kwon, Samsun Sung, Sunjin Moon, Kyung-Tai Lee, Namshin Kim, Joon Ki Hong, Kyung Yeon Eo, Kang Seok Seo, Girak Kim, Sungmoo Park, Cheol-Heui Yun, Hyunil Kim, Kimyung Choi, Jiho Kim, Woon Kyu Lee, Duk-Kyung Kim, Jae-Don Oh, Eui-Soo Kim, Seoae Cho, Hak-Kyo Lee, Tae-Hun Kim, Heebal Kim. Exploring the Genetic Signature of Body Size in Yucatan Miniature Pig. PLoS ONE. 2015. DOI: 10.1186/1471-2164-7-220.. [LINK]


  136. Taehyung Kwon, Sook Hee Yoon, Kyu-Won Kim, Kelsey Caetano-Anolles, Seoae Cho, Heebal Kim. Time-calibrated phylogenomics of the classical swine fever viruses: genome-wide Bayesian coalescent approach. PLoS ONE. 2015. DOI: 10.1371/journal.pone.0121578. [LINK]


  137. Leif Andersson, Alan L Archibald, Cynthia D Bottema, Rudiger Brauning, Shane C Burgess, Dave W Burt, Eduardo Casas, Hans H Cheng, Laura Clarke, Christine Couldrey, Brian P Dalrymple, Christine G Elsik, Sylvain Foissac, Elisabetta Giuffra, Martien A Groenen, Ben J Hayes, LuSheng S Huang, Hassan Khatib, James W Kijas, Heebal Kim, Joan K Lunney, Fiona M McCarthy, John C McEwan, Stephen Moore, Bindu Nanduri, Cedric Notredame, Yniv Palti, Graham S Plastow, James M Reecy, Gary A Rohrer, Elena Sarropoulou, Carl J Schmidt, Jeffrey Silv erstein, Ross L Tellam, Michele Tixier-Boichard, Gwenola Tosser-Klopp, Christopher K Tuggle, Johanna Vilkki, Stephen N White, Shuhong Zhao, Huaijun Zhou and The FAANG Consortium. Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project. Genome Biology. 2015. DOI: 10.1186/s13059-015-0622-4. [LINK]


  138. Kwang-Hyun Cho, Jae-Don Oh, Hee-bal Kim, Kyung-Do Park, Joon-Ho Lee. Genome Wide Association Studies Using Multiple-lactation Breeding Value in Holsteins. AJAS. 2015. DOI: 10.5713/ajas.14.0337. [LINK]


  139. Sunjin Moon, Tae-Hun Kim, Kyung-Tai Lee, Woori Kwak, Taeheon Lee, Si-Woo Lee, Myung-Jick Kim, Kyuho Cho, Namshin Kim, Won-Hyong Chung, Samsun Sung, Taesung Park, Seoae Cho, Martien AM Groenen, Rasmus Nielsen, Yuseob Kim and Heebal Kim. A genome-wide scan for signatures of directional selection in domesticated pigs. BMC Genomics. 2015. DOI: 10.1186/s12864-015-1330-x. [LINK]


  140. Jonghoon Lee, Nur Kholilatul Izzah, Murukarthick Jayakodi, Sampath Perumal, Ho Jun Joh, Hyeon Ju Lee, Sang-Choon Lee, Jee Young Park, Ki-Woung Yang, Il-Sup Nou, Joodeok Seo, Jaeheung Yoo, Youngdeok Suh, Kyounggu Ahn, Ji Hyun Lee,Gyung Ja Choi, Yeisoo Yu, Heebal Kim and Tae-Jin Yang. Genome-wide SNP identification and QTL mapping for black rot resistance in cabbage. BMC Plant Biology. 2015. DOI: 10.1186/s12870-015-0424-6. [LINK]


  141. Bo-Young Lee, Kwang-Nyeong Lee, Taeheon Lee, Jong-Hyeon Park, Su-Mi Kim, Hyang-Sim Lee, Dong-Su Chung, Hang-Sub Shim, Hak-Kyo Lee, Heebal Kim. Bovine Genome-wide Association Study for Genetic Elements to Resist the Infection of Foot-and-mouth Disease in the Field. AJAS. 2015. DOI: 10.5713/ajas.14.0383. [LINK]


  142. Jaemin Kim, Seoae Cho, Kelsey Caetano-Anolles, Heebal Kim and Youn-Chul Ryu. Genome-wide detection and characterization of positive selection in Korean Native Black Pig from Jeju Island. BMC Genetics. 2015. DOI: 10.3390/genes11060678. [LINK]


  143. Jung Youn Park, Yong-Rock An, Naohisa Kanda, Chul-Min An, Hye Suck An, Jung-Ha Kang, Eun Mi Kim, Du-Hae An, Hojin Jung, Myunghee Joung, Myung Hum Park, Sook Hee Yoon, Bo-Young Lee, Taeheon Lee, Kyu-Won Kim, Won Cheoul Park, Dong Hyun Shin, Young Sub Lee, Jaemin Kim, Woori Kwak, Hyeon Jeong Kim, Young-Jun Kwon, Sunjin Moon, Yuseob Kim, David W Burt, Seoae Cho and Heebal Kim. Cetaceans evolution: insights from the genome sequences of common minke whales. BMC Genomics. 2015. DOI: 10.1186/s12864-015-1213-1. [LINK]


  144. Kwondo Kim, Woori Kwak, Sam-Sun Sung, Seoae Cho, Heebal Kim, Duhak Yoon and Hyun-Jeong Lee. A Novel Genetic Variant Database for Korean Native Cattle (Hanwoo): HanwooGDB. Genes & Genomics. 2015. DOI: 10.1007/s13258-014-0224-7. [LINK]


    145. 2014

  145. Sooyeon Lim, Dong-Hoon Lee, Woori Kwak, Hakdong Shin, Hye-Jin Ku, Jong-eun Lee, Gun Eui Lee, Heebal Kim, Sang-Ho Choi, Sangryeol Ryu, Ju-Hoon Lee. Comparative genomic analysis of Staphylococcus aureus FORC_001 and S. aureus MRSA252 reveals the characteristics of antibiotic resistance and virulence factors for human infection. Journal of Microbiology and Biotechnology. 2014. DOI: 10.4014/jmb.1410.10005. [LINK]


  146. Young-Sup Lee, Hyeon-Jeong Kim, Seoae Cho, Heebal Kim. The usage of SNP-SNP relationship matrix in the best linear unbiased prediction (BLUP) analysis using the community based cohort study. Genomics & Informatics. 2014. DOI: 10.5808/GI.2014.12.4.254. [LINK]


  147. HyoYoung Kim, Samsun Sung, Seoae Cho, Tae-Hun Kim, Heebal Kim. VCS: tool for Visualizing Copy number variation and Single nucleotide polymorphism. Asian-Australasian Journal of Animal Sciences. 2014. DOI: 10.5713/ajas.2014.14143. [LINK]


  148. Guojie Zhang,Cai Li, Qiye Li, Bo Li, Denis M. Larkin, Chul Lee, Jay. Comparative genomics reveals insights into avian genome evolution and adaptation. Science. 2014. DOI: 10.1007/s00438-019-01601-8. [LINK]


  149. Woori Kwak, Ki-Duk Song, Jae-Don Oh, Kang-Nyeong Heo, Jun-Heon Lee, Woon Kyu Lee, Sook Hee Yoon, Heebal Kim, Seoae Cho and Hak-Kyo Lee. Uncovering genomic features and maternal origin of Korean Native Chicken by whole genome sequencing. PLoS ONE. 2014. DOI: 10.1371/journal.pone.0114763. [LINK]


  150. Minsu Park, Tae-Hun Kim, Eun-Seok Cho, Heebal Kim, Hee-Seok Oh. Genomic Selection for Adjacent Genetic Markers of Yorkshire Pigs Using Regularized Regression Approaches. AJAS. 2014. DOI: 10.5713/ajas.2014.14236. [LINK]


  151. Woori Kwak, Jin-nam Kim, Daewon Kim, Jin Su Hong, Jae Hark Jeong, Heebal Kim, Seoae Cho, Yoo Yong Kim. Genome-wide DNA Methylation Profiles of Small Intestine and Liver in Fast-growing and Slow-growing Weaning Piglets. Asian-Australasian Journal of Animal Sciences. 2014. DOI: 10.5713/ajas.14.0008. [LINK]


  152. Sung Wook Hwang, Nayoung Kim, Hye-Kyung Jung, Ji Hyun Park, Yoon Jin Choi, Heebal Kim, Jaemin Kim, Joo Sung Kim, and Hyun Chae Jung. The association of SLC6A4 5-HTTLPR and TRPV1 945G>C with functional dyspepsia in Korea. Journal of Gastroenterology and Hepatology. 2014. DOI: 10.1111/jgh.12596. [LINK]


  153. Hyeon-Soo Jeong, Dae-Won Kim, Se-Yoon Chun, Samsun Sung, Hyeon-Jeong Kim, Seoae Cho, Heebal Kim, Sung-Jong Oh. Native Pig and Chicken Breed Database: NPCDB. AJAS. 2014. DOI: 10.5713/ajas.2014.14059. [LINK]


  154. Young-Sup Lee, Jin Woo Lee, Heebal Kim. Estimating effective population size of thoroughbred horses using linkage disequilibrium and theta value. Livestock Science. 2014. DOI: 10.1016/j.livsci.2014.08.008. [LINK]


  155. Joon-Ho Lee, Taeheon Lee, Hak-Kyo Lee, Byung-Wook Cho, Dong-Hyun Shin, Kyoung-Tag Do, Samsun Sung, Woori Kwak, Hyeon Jeong Kim, Heebal Kim, Seoae Cho, Kyung-Do Park. Thoroughbred Horse Single Nucleotide Polymorphism and Expression Database: HSDB Asian Australas. Asian-Australasian Journal of Animal Sciences. 2014. DOI: 10.5713/ajas.2013.13694.. [LINK]


  156. Kyung-Do Park, Hyeongmin Kim, Jae Yeon Hwang, Chang-Kyu Lee, Kyoung-Tag Do, Heui-Soo Kim, Young-Mok Yang, Young-jun Kwon, Jaemin Kim, Hyeon Jeong Kim, Ki-Duk Song, Jae-Don Oh, Heebal Kim, Byung-Wook Cho, Seoae Cho, Hak-Kyo Lee. Copy Number Deletion Has Little Impact on Gene Expression Levels in Racehorses. Asian-Australasian Journal of Animal Sciences. 2014. DOI: 10.5713/ajas.2013.13857. [LINK]


  157. Simrinder Singh Sodhi, Won Cheoul Park, Mrinmoy Ghosh, Jin Nam Kim, Neelesh Sharma, Kwang Yun Shin, In Cheol Cho, Youn Chul Ryu, Sung Jong Oh, Sung Hoon Kim, Ki-Duk Song, Sang Pyo Hong, Seo Ae Cho, Hee Bal Kim, Dong Kee Jeong. Comparative transcriptomic analysis to identify differentially expressed genes in fat tissue of adult Berkshire and Jeju Native Pig using RNA-seq. Molecular Biology Reports . 2014. DOI: 10.1007/s11033-014-3513-y. [LINK]


  158. Jintaek Im, Taeheon Lee, Jun Ho Jeon, Jung Eun Baik, Kyoung Whun Kim, Seok-Seong Kang, Cheol-Heui Yun, Heebal Kim, Seung Hyun Han. Gene expression profiling of bovine mammary gland epithelial cells stimulated with lipoteichoic acid plus peptidoglycan from Staphylococcus aureus. International Immunopharmacology. 2014. DOI: 10.1016/j.intimp.2014.05.002. [LINK]


  159. Hyun-Jeong Lee, Jaemin Kim, Taeheon Lee, Jun Kyu Son, Ho-Baek Yoon, Kwang-Soo Baek, Jin Young Jeong, Yong-Min Cho, Kyung-Tai Lee, Byoung-Chul Yang, Kwanghyeon Cho, Tae-Hun Kim, Eung Gi Kwon, Jungrye Nam, Woori Kwak, Seoae Cho, Heebal Kim. Deciphering the genetic blueprint behind Holstein milk proteins and production. Genome Biology and Evolution . 2014. DOI: 10.1093/gbe/evu102. [LINK]


  160. Hyeonju Ahn, Kyu-Won Kim, Hyeon Jeong Kim, Seoae Cho, and Heebal Kim. Differential Evolution between Monotocous and Polytocous Species. Asian-Australasian Journal of Animal Sciences. 2014. DOI: 10.5713/ajas.2013.13696. [LINK]


  161. HyoYoung Kim, Won Gi Yoo, Junhyung Park, Heebal Kim, Byeong-Chul Kang. Semantic modeling for SNPs associated with ethnic disparities in HapMap samples. Genomics & Informatics. 2014. DOI: 10.5808/GI.2014.12.1.35. [LINK]


  162. Taeheon Lee, Dong-Hyun Shin, Seoae Cho, Hyun Sung Kang, Sung Hoon Kim, Hak-Kyo Lee, Heebal Kim and Kang-Seok Seo. Genome-wide association study of integrated meat quality-related t raits of the Duroc pig breed. Asian-Australasian Journal of Animal Sciences. 2014. DOI: 10.3390/genes11060678. [LINK]


  163. Dong-Hyun Shin, Hyun-Jeong Lee, Seoae Cho, Hyeon Jeong Kim, Jae Yeon Hwang, Chang-Kyu Lee, JinYoung Jeong, Duhak Yoon, Heebal Kim. Deleted copy number variation of Hanwoo and Holstein using next generation sequencing at the population level. BMC Genomics. 2014. DOI: 10.1186/1471-2164-15-240. [LINK]


  164. Woncheoul Park, Jaemin Kim, Hyeonjeong Kim, JaeYoung Choi, Jeong-Woong Park, Hyun-Woo Cho, Byeong-Woo Kim, Myung Hum Park, Teak-Soon Shin, Seong-Keun Cho, Jun-Kyu Park, Heebal Kim, Jae Yeon Hwang, Chang-Kyu Lee, HAK-KYO Lee, Seoae Cho, Byung-Wook Cho. Investigation of de novo unique differentially expressed genes related to evolution in exercise response during domestication in Thoroughbred race horses. PLoS ONE. 2014. DOI: 10.1371/journal.pone.0091418. [LINK]


  165. Jaemin Kim, Taeheon Lee, Hyun-Jeong Lee, Heebal Kim. Genotype-environment interactions for quantitative traits in Korea Associated Resource (KARE) cohorts. BMC Genetics. 2014. DOI: 10.1186/1471-2156-15-18. [LINK]


  166. Dajeong Lim, Nam-Kuk Kim, Seung-Hwan Lee, Hye-Sun Park, Yong-Min Cho, Han-Ha Chai and Heebal Kim. Characterization of Genes for Beef Marbling Based on Applying Gene Coexpression Network. International Journal of Genomics. 2014. DOI: 10.1155/2014/708562. [LINK]


    167. 2013

  167. Dong-Hyun Shin, Kwang-Hyun Cho, Kyoung-Do Park, Hyun-Jeong Lee, Heebal Kim. Accurate Estimation of Effective Population Size in the Korean Dairy Cattle Based on Linkage Disequilibrium Corrected by Genomic Relationship Matrix. Asian-Australasian Journal of Animal Sciences. 2013. DOI: 10.5713/ajas.2013.13320. [LINK]


  168. Mi Na Park, Jin Ae Choi, Kyung-Tai Lee, Hyun-Jeong Lee, Bong-Hwan Choi, Heebal Kim, Tae-Hun Kim, Seoae Cho, Taeheon Lee. Genome-wide Association Study of Chicken Plumage Pigmentation. Asian-Australasian Journal of Animal Sciences. 2013. DOI: 10.5194/aab-63-231-2020. [LINK]


  169. Sook Hee Yoon, Hyekwon Kim, Jaemin Kim, Hak-Kyo Lee, Bongkyun Park, Heebal Kim. Complete genome sequences of porcine reproductive and respiratory syndrome viruses: perspectives on their temporal and spatial dynamics. Molecular Biology Reports . 2013. DOI: 10.1007/s11033-013-2802-1. [LINK]


  170. SooYeon Lim, Jaehyun Seo, Hyunbong Choi, Duhak Yoon, Jungrye Nam, Heebal Kim, Seoae Cho, and Jongsoo Chang. Metagenome Analysis of Protein Domain Collocation within Cellulase Genes of Goat Rumen Microbes. Asian-Australasian Journal of Animal Sciences. 2013. DOI: 10.5713/ajas.2013.13219. [LINK]


  171. Jun Sang Ham, Woori Kwak, Oun Ki Chang, Gi Sung Han, Seok Geun Jeong, Kuk Hwan Seol, Hyoun Wook Kim, Geun Ho Kang, Beom Young Park, Hyun-Jeong Lee, Jong Geun Kim, Kyu-won Kim, Samsun Sung, Taeheon Lee, Seoae Cho, Heebal Kim. De novo assembly and comparative analysis of the Enterococcus faecalis genome (KACC91532) from a Korean neonate. Journal of Microbiology and Biotechnology. 2013. DOI: 10.4014/jmb.1303.03045. [LINK]


  172. Semantic networks for genome-wide CNV associated with AST and ALT in Korean cohorts. Molecular & Cellular Toxicology. 2013. DOI: 10.1007/s13273-013-0014-3. [LINK]


  173. Kyu-Won Kim, David W. Burt, Heebal Kim, Seoae Cho. Identification of differentially evolved genes: An alternative approach to detection of accelerated molecular evolution from genome-wide comparative data. Evolutionary Bioinformatics. 2013. DOI: 10.4137/EBO.S12166. [LINK]


  174. Park Woncheoul, Oh Hee-Seok, Kim Heebal. Acceleration of X-chromosome gene order evolution in the cattle lineage. BMB Report. 2013. DOI: 10.5483/BMBRep.2013.46.6.185. [LINK]


  175. Comparative transcriptome analysis of adipose tissues reveals that ECM-receptor interaction involved in the depot-specific adipogenesis in cattle. PLoS ONE. 2013. DOI: 10.1371/journal.pone.0066267. [LINK]


  176. Yinhua Huang, Yingrui Li, David W Burt, Hualan Chen, Yong Zhang, Wubin Qian, Heebal Kim, Shangquan Gan, Yiqiang Zhao, Jianwen Li, Kang Yi, Huapeng Feng, Pengyang Zhu, Bo Li, Qiuyue Liu, Suan Fairley, Katharine E Magor, Zhenlin Du, Xiaoxiang Hu, Laurie Goodman, Hakim Tafer, Alain Vignal, Taeheon Lee, Kyu-Won Kim, Zheya Sheng, Yang An, Steve Searle, Javier Herrero, Martien A M Groenen, ..., Frederique Pitel, Jun Wang & Ning Li. The duck genome and transcriptome provide insight into an avian influenza virus reservoir species. Nature Genetics. 2013. DOI: 10.1038/ng.2657. [LINK]


  177. Peeling Back the Evolutionary Layers of Molecular Mechanisms Responsive to Exercise-Stress in the Skeletal Muscle of the Racing Horse. DNA Research. 2013. DOI: 10.1093/dnares/dst010. [LINK]


  178. Genetic diversity, population structure and relationships in indigenous cattle populations of Ethiopia and Korean Hanwoo breeds using SNP markers. Frontiers in Genetics. 2013. DOI: 10.3389/fgene.2013.00035. [LINK]


  179. Jian Yang, Taeheon Lee, Jaemin Kim, Myeong-Chan Cho, Bok-Ghee Han, Jong-Young Lee, Hyun-Jeong Lee, Seoae Cho, Heebal Kim. Ubiquitous Polygenicity of Human Complex Traits: Genome-Wide Analysis of 49 Traits in Koreans. PLoS Genetics. 2013. DOI: 10.1371/journal.pgen.1003355. [LINK]


  180. Jin-Kyu Park, Hye-Sun Kim, Kyung-Jun Uh, Kwang-Hwan Choi, Hyeong-Min Kim, Taeheon Lee, Byung-Chul Yang, Hyun-Jong Kim, Hak-Hyun Ka, Heebal Kim, Chang-Kyu Lee. Primed pluripotent cell lines derived from various embryonic origins and somatic cells in pig. PLoS ONE. 2013. DOI: 10.1371/journal.pone.0052481. [LINK]


  181. Lee Taeheon, Seo Kang Seok, Chang Jongsoo, Kim Heebal, Yoon Duhak. Genetic variants and signatures of selective sweep of Hanwoo population (Korean native cattle). BMB Report. 2013. DOI: 10.3390/genes11060678. [LINK]


  182. Dajeong Lim, Seung-Hwan Lee, Nam-Kuk Kim, Yong-Min Cho, Han-Ha Chai1, Hwan-Hoo Seong and Heebal Kim. Gene Co-expression Analysis to Characterize Genes Related to Marbling Trait in Hanwoo (Korean) Cattle. Asian-Australasian Journal of Animal Sciences. 2013. DOI: 10.3390/genes11060678. [LINK]


    183. 2012

  183. Hyeongmin Kim, Taeheon Lee, Samsun Sung, Changkyu Lee & Heebal Kim. Reanalysis of Ohno's hypothesis on conservation of the size of the X chromosome in mammals. Animal Cells And Systems. 2012. DOI: 10.1080/19768354.2012.724709. [LINK]


  184. Jaemin Kim, Taeheon Lee, Tae-Hun Kim, Kyung-Tai Lee, Heebal Kim. An integrated approach of comparative genomics and heritability analysis of pig and human on obesity trait: evidence for candidate genes on human chromosome 2. BMC Genomics. 2012. DOI: 10.1186/1471-2164-13-711. [LINK]


  185. Martien A. M. Groenen, Alan L. Archibald, Hirohide Uenishi, Christopher K. Tuggle, Yasuhiro Takeuchi, Max F. Rothschild, Claire Rogel-Gaillard, Chankyu Park, Denis Milan, Hendrik-Jan Megens, Shengting Li, Denis M. Larkin, Heebal Kim, Laurent A. F. Frantz, Mario Caccamo, Hyeonju Ahn, Bronwen L. Aken, Anna Anselmo, Christian Anthon, Loretta Auvil, Bouabid Badaoui, Craig W. Beattie, Christian Bendixen, Daniel Berman, Frank Blecha, Jonas Blomberg, Lars Bolund, Mirte Bosse, Sara Botti, Zhan Bujie, Megan Bystrom, Boris Capitanu, Denise Carvalho-Silva, Patrick Chardon, Celine Chen, Ryan Cheng, Sang-Haeng Choi, William Chow, Richard C. Clark, Christopher Clee, Richard P. M. A. Crooijmans, Harry D. Dawson, Patrice Dehais, Fioravante De Sapio, Bert Dibbits, Nizar Drou, Zhi-Qiang Du, Kellye Eversole, João Fadista, Susan Fairley, Thomas Faraut, Geoffrey J. Faulkner, Katie E. Fowler, Merete Fredholm, Eric Fritz, James G. R. Gilbert, Elisabetta Giuffra, Jan Gorodkin, Darren K. Griffin, Jennifer L. Harrow, Alexander Hayward, Kerstin Howe, Zhi-Liang Hu, Sean J. Humphray, Toby Hunt, Henrik Hornshøj, Jin-Tae Jeon, Patric Jern, Matthew Jones, Jerzy Jurka, Hiroyuki Kanamori, Ronan Kapetanovic, Jaebum Kim, Jae-Hwan Kim, Kyu-Won Kim, Tae-Hun Kim, Greger Larson, Kyooyeol Lee, Kyung-Tai Lee, Richard Leggett, Harris A. Lewin, Yingrui Li, Wansheng Liu, Jane E. Loveland, Yao Lu, Joan K. Lunney, Jian Ma, Ole Madsen, Katherine Mann, Lucy Matthews, Stuart McLaren, Takeya Morozumi, Michael P. Murtaugh, Jitendra Narayan, Dinh Truong Nguyen, Peixiang Ni, Song-Jung Oh, Suneel Onteru, Frank Panitz, Eung-Woo Park, Hong-Seog Park, Geraldine Pascal, Yogesh Paudel, Miguel Perez-Enciso, Ricardo Ramirez-Gonzalez, James M. Reecy, Sandra Rodriguez-Zas, Gary A. Rohrer, Lauretta Rund, Yongming Sang, Kyle Schachtschneider, Joshua G. Schraiber, John Schwartz, Linda Scobie, Carol Scott, Stephen Searle, Bertrand Servin, Bruce R. Southey, Goran Sperber, Peter Stadler, Jonathan V. Sweedler, Hakim Tafer, Bo Thomsen, Rashmi Wali, Jian Wang, Jun Wang, Simon White, Xun Xu, Martine Yerle, Guojie Zhang, Jianguo Zhang, Jie Zhang, Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schoo k(International Pig Genome Consortium). Analyses of pig genomes provide insight into porcine demography and evolution. Nature. 2012. DOI: 10.1038/nature11622. [LINK]


  186. Bo-Young Lee, Dong Hyun Shin, Seoae Cho, Kang-Seok Seo, and Heebal Kim. Microarray Analysis of Gene Expression in the Uterine Endometrium during the Implantation Period in Pigs. Asian-Australasian Journal of Animal Sciences. 2012. DOI: 10.3390/ijms21030890. [LINK]


  187. Sook Hee Yoon, Hyekwon Kim, Bongkyun Park and Heebal Kim. Tracing the genetic history of porcine reproductive and respiratory syndrome viruses derived from the complete ORF 5-7 sequences: a Bayesian coalescent approach. Archives of Virology. 2012. DOI: 10.1007/s00705-012-1408-6. [LINK]


  188. Mingoo Kim, Heewon Seo, Yohan Choi, Jangsoo Shim, Heebal Kim, Chang-Kyu Lee and Hakhyun Ka. Genome-wide analysis of copy number variations reveals that ageing processes influence body fat distribution in Korea Associated Resource (KARE) cohorts. Human genetics. 2012. DOI: 10.1007/s00439-012-1203-1. [LINK]


  189. Seok-Seong Kang, Hye Jin Kim, Mi Seon Jang, Sunjin Moon, Sang In Lee, Jun Ho Jeon, Jung Eun Baik, Ok-Jin Park, Young Min Son, Gi Rak Kim, Donghyun Joo, Heebal Kim, Jae Yong Han, Cheol-Heui Yun, Seung Hyun Han. Gene expression profile of human peripheral blood mononuclear cells induced by Staphylococcus aureus lipoteichoic acid. International Immunopharmacology. 2012. DOI: 10.5713/ajas.14.0008. [LINK]


  190. Anita Khatiwara, Tieshan Jiang, Sam-Sun Sung, Turki Dawoud, Jeong Nam Kim, Dhruva Bhattacharya, Heebal Kim, Steven C. Ricke and Young Min Kwon. Genome scanning for conditionally essential genes in Salmonella enterica Serotype Typhimurium. Appl Environ Microbiol. 2012. DOI: 10.5713/ajas.14.0008. [LINK]


  191. Bo-Young Lee, Tai-Young Hur, Young-Hun Jung, Heebal Kim. Identification of BoLA-DRB3.2 alleles in Korean Native Cattle (Hanwoo) and Holstein populations using a next generation sequencer. Animal Genetics. 2012. DOI: 10.1111/j.1365-2052.2011.02264.x. [LINK]


    192. 2011

  192. Dajeong Lim, Kyung-Tai Lee, Jong Eun Park, Heebal Kim, Tae-Hun Kim, Bong-Hwan Choi, Myung Jick Kim, Hye-Sun Park, Gul-Won Jang. Analysis. Analysis of gene expression profiles from subcutaneous adipose tissue of two pig breeds. Genes & Genomics. 2011. DOI: 10.1021/acs.jafc.9b08191. [LINK]


  193. Kyung Mo Kim, Kyu-Won Kim, Samsun Sung, Heebal Kim. A genome-wide identification of genes potentially associated with host specificity of Brucella species. The Journal of Microbiology. 2011. DOI: 10.1007/s12275-011-1084-3. [LINK]


  194. Jeongsoo Lee, Heebal Kim and Sidong Kim. Development of an Integrated General Model (IGM) System for Comparison of Genetic Gains from Different Bull Selection Strategies for Korean Brown Cattle (Hanwoo). Asian-Australasian Journal of Animal Sciences. 2011. DOI: 10.5713/ajas.2011.10185. [LINK]


  195. Hyo-Young Kim, Mi-Jeong Byun, and Heebal Kim. A replication study of genome-wide CNV association for hepatic biomarkers identifies nine genes associated with the liver function. BMB Report. 2011. DOI: 10.5483/BMBRep.2011.44.9.578. [LINK]


  196. Dajeong Lim, Nam-Kuk Kim, Hye-Sun Park, Seung-Hwan Lee, Yong-Min Cho, Sung Jong Oh, Tae-Hun Kim, Heebal Kim. Identification of Candidate Genes related to Bovine Marbling using Protein-Protein Interaction Networks. International Journal of Biological Sciences. 2011. DOI: 10.7150/ijbs.7.992. [LINK]


  197. Jun-Sang Ham, Taeheon Lee, Mi-Jeong Byun, Kyung-Tae Lee, Min-Kyung Kim, Gi-Sung Han, Seok-Geun Jeong, Mi-Hwa Oh, Dong-Hun Kim, Heebal Kim. Complete genome sequence of Bifidobacterium longum subsp. longum KACC 91563. Journal of Bacteriology. 2011. DOI: 10.1128/JB.05620-11. [LINK]


  198. Sook Hee Yoon, Woncheoul Park, Donald P. King, and Heebal Kim. Phylogenomics and molecular evolution of foot-and-mouth disease virus. Molecules and Cells. 2011. DOI: 10.1007/s10059-011-0249-6. [LINK]


  199. Kyung-Tai Lee, Mi-Jeong Byun, Kyung-Soo Kang, Eung-Woo Park, Seung-Hwan Lee, Seoae Cho, HyoYoung Kim, Kyu-Won Kim, TaeHeon Lee, Jong-Eun Park, WonCheoul Park, DongHyun Shin, Hong-Seog Park, Jin-Tae Jeon, Bong-Hwan Choi, Gul-Won Jang, Sang-Haeng Choi, Dae-Won Kim, Dajeong Lim, Hae-Suk Park, Mi-Rim Park, Jurg Ott, Lawrence B. Schook, Tae-Hun Kim & Heebal Kim. Neuronal genes for subcutaneous fat thickness in human and pig are identified by local genomic sequencing and combined SNP association study. PLoS ONE. 2011. DOI: 10.1371/journal.pone.0016356. [LINK]


  200. Sook Hee Yoon, Kwang-Nyeong Lee, Jong-Hyeon Park, Heebal Kim. Molecular epidemiology of foot-and-mouth disease virus serotypes A and O with emphasis on Korean isolates: temporal and spatial dynamics. Archives of Virology. 2011. DOI: 10.1007/s00705-011-0921-3. [LINK]


  201. Xiaoping Li, Sang-Wook Kim, Kyoung-Tag Do, You-Kyoung Ha, Yun-Mi Lee, Sook Hee Yoon, Heebal Kim, Jong-Joo Kim, Bong-Hwan Choi, Kwan-Suk Kim. Analyses of porcine public SNPs in coding-gene regions by re-sequencing and phenotypic association studies. Molecular Biology Reports . 2011. DOI: 10.1007/s11033-010-0496-1. [LINK]


  202. Bo-Young Lee, Seoae Cho, DongHyun Shin, and Heebal Kim. Genome-wide association study of copy number variations associated with pulmonary function measures in Korea Associated Resource (KARE) cohorts. Genomics. 2011. DOI: 10.1016/j.ygeno.2010.11.001. [LINK]


  203. Jong-Eun Park, Jeong-Ran Lee, Seungyoon Oh, Jin Woo Lee, Hee-Seok Oh, Heebal Kim. Principal components analysis applied to genetic evaluation of racing performance of Thoroughbred race horses in Korea. Livestock Science. 2011. DOI: 10.1016/j.livsci.2010.07.014. [LINK]


  204. Kwang-Nyeong Lee, Tung Nguyen, Su-Mi Kim, Jong-Hyeon Park, Hoa T. Do, Huong T.Ngo, Duong T. Mai, Seo-Yong Lee, Cam V. Nguyen, Sook Hee Yoon, Chang-Hee Kweon, In-Soo Cho, Heebal Kim. Direct typing and molecular evolutionary analysis of field samples of foot-and-mouth disease virus collected in Vietnam between 2006 and 2007. Veterinary Microbiology. 2011. DOI: 10.1016/j.vetmic.2010.06.030.. [LINK]


    205. 2010

  205. Jeong-Ran Lee, Jin Woo Lee, Heebal Kim and Hee-Seok Oh. Prediction models for racing performance of domestic progeny of Thoroughbreds. Journal of Animal Science and Technology. 2010. DOI: 10.5187/JAST.2010.52.6.459. [LINK]


  206. Dajeong Lim, Yong-Min Cho, Seung-Hwan Lee, Samsun Sung, Jungrye Nam, Duhak Yoon, Younhee Shin, Hye-Sun Park and Heebal Kim. An integrated genomic resource based on Korean cattle (Hanwoo) transcripts. Asian-Australasian Journal of Animal Sciences. 2010. DOI: 10.5713/ajas.2010.90250. [LINK]


  207. Rami A. Dalloul, Julie A. Long, Aleksey V. Zimin, Luqman Aslam, Kathryn Beal, Le Ann Blomberg , David W. Burt, Oswald Crasta, Richard P.M.A. Crooijmans , Kristal Cooper, Roger A. Coulombe, Supriyo De, Mary E. Delany, Jerry B. Dodgson, Jennifer J. Dong , Clive Evans, Paul Flicek, Liliana Florea, Otto Folkerts, Martien A.M. Groenen, Tim T. Harkins, Javier Herrero, Steve Hoffmann, Hendrik-Jan Megens, Andrew Jiang, Pieter de Jong, Pete Kaiser, Heebal Kim, Kyu-Won Kim, Sungwon Kim, David Langenberger, Mi-Kyung Lee, Taeheon Lee, Shrinivasrao Mane, Guillaume Marcais, Manja Marz, Audrey P. McElroy, Thero Modise, Mikhail Nefedov, C?dric Notredame, Ian R. Paton, William S. Payne, Geo Pertea, Dennis Prickett, Daniela Puiu, Dan Qioa, Emanuele Raineri, Magali Ruffier, Steven L. Salzberg, Michael C. Schatz, Chantel Scheuring, Carl J. Schmidt, Steven Schroeder, Stephen MJ Searle, Edward J. Smith, Jacqueline Smith, Tad S. Sonstegard, Peter F. Stadler, Hakim Tafer, Zhijian (Jake) Tu, Curtis P. Van Tassell, Albert J. Vilella, Kelly P. Williams, James A. Yorke, Liqing Zhang, Hong-Bin Zhang, Xiaojun Zhang, Yang Zhang, and Kent M. Reed. Multi-platform Next Generation Sequencing of the Domestic Turkey (Meleagris gallopavo): Genome Assembly and Analysis. PLoS Biology. 2010. DOI: 10.1371/journal.pbio.1000475. [LINK]


  208. Hyo-Young Kim, Seoae Cho, Jeongmi Yu, Samsun Sung, and Heebal Kim. Analysis of copy number variation in 8,842 Korean individuals reveals 39 genes associated with hepatic biomarkers AST and ALT. BMB Report. 2010. DOI: 10.5483/BMBRep.2010.43.8.547. [LINK]


  209. Jun-Sang Ham, Seung-Gyu Lee, Seok-Geun Jeong, Mi-Hwa Oh, Dong-Hun Kim, Taehun Lee, Bo-Young Lee, Sook Hee Yoon, Heebal Kim. Powerful usage of phylogenetically diverse Staphylococcus aureus control strains for detecting multidrug resistance genes in transcriptomics studies. Molecules and Cells. 2010. DOI: 10.1007/s10059-010-0090-3. [LINK]


  210. Seoae Cho, Kyunga Kim, Young Jin Kim, Jong-Keuk Lee, Yoon Shin Cho, Jong-Young Lee, Bok-Ghee Han, Heebal Kim, Jurg Ott, Taesung Park. Joint Identification of Multiple Genetic Variants via Elastic-Net Variable Selection in a Genome-Wide Association Analysis. Annals Of Human Genetics. 2010. DOI: 10.1111/j.1469-1809.2010.00597.x. [LINK]


  211. Hee-Seok Oh, Dongik Jang, Seungyoon Oh and Heebal Kim. Improved Statistical Testing of Two-class Microarrays with a Robust Statistical Approach. Interdisciplinary Bio Central. 2010. DOI: 10.4051/ibc.2010.2.2.0004. [LINK]


  212. Dajeong Lim, Seung Hwan Lee, Yong Min Cho, Duhak Yoon, Younhee Shin, Kyu Won Kim, Hye Sun Park, Heebal Kim. Transcript profiling of expressed sequence tags from intramuscular fat, longissimus dorsi muscle and liver in Korean cattle (Hanwoo). BMB Report. 2010. DOI: 10.5483/BMBRep.2010.43.2.115. [LINK]


    213. 2009

  213. Choi JY, Kwon SJ, Roh JY, Yang TJ, Yoon SH, Kim H, Li MS, Park BS, Woo SD, Jin BR, Kim Y, Je YH. Sequence and gene organization of 24 circles from the Cotesia plutellae bracovirus genome. Archives of Virology. 2009. DOI: 10.1007/s00705-009-0441-6. [LINK]


  214. HyoYoung Kim, Heebal Kim. Comparative analysis of repetitive elements of imprinting genes reveals eleven candidate impriting genes in cattle. Asian-Australasian Journal of Animal Sciences. 2009. DOI: 10.5713/ajas.2009.80485. [LINK]


  215. Han BK, Jung JG, Nam J, Moon JK, Kim JN, Lee SI, Kim JK, Kim H, Han JY. Identification of the Major Proteins Produced by Cultured Germline Stem Cell in Chicken. J Androl. 2009. DOI: 10.2164/jandrol.108.007401. [LINK]


  216. Sang In Lee, Woon Kyu Lee, Ji Hye Shin, Beom Ku Han, Sunjin Moon, Seoae Cho, Taesung Park, Heebal Kim, and Jae Yong Han. Sexually dimorphic gene expression in the chick brain before gonadal differentiation. Poultry Science. 2009. DOI: 10.3382/ps.2008-00197. [LINK]


  217. Seungyoon Oh, Jong Eun Park, Jeong Ran Lee, Jin Woo Lee, Hee Seok Oh and Heebal Kim. Estimation of Genetic Parameters and Annual Trends for Racing Times of Thoroughbred Racehorses. Journal of Animal Science and Technology. 2009. DOI: -. [LINK]


  218. Seung Pyo Gong, Heebal Kim, Eun Ju Lee, Seung Tae Lee, Sunjin Moon, Ho-Joon Lee and Jeong Mook Lim. Change in Gene Expression of Mouse Embryonic Stem Cells Derived from Parthenogenetic Activation. Human Reproduction . 2009. DOI: 10.1093/hmg/ddp150. [LINK]


  219. Dajeong Lim, Yong-Min Cho, Kyung-Tai Lee, Yeonkyung Kang, Samsun Sung, Jungrye Nam, Eung-Woo Park, Sung-Jong Oh, Seok-Ki Im and Heebal Kim. The Pig Genome Database (PiGenome): An integrated database for pig genome research. Mammalian Genome. 2009. DOI: 10.1007/s00335-008-9156-3. [LINK]


  220. Kwang-Nyeong Lee, Lae-Ku Oem, Jong-Hyeon Park, Su-Mi Kim, Seo-Yong Lee, Sh, Tserendorj, R. Sodnomdarjaa, Yi-Seok Joo, Heebal Kim. Evidence of recombination in a new isolate of foot-and mouth disease virus serotype Asia 1. Virus Research. 2009. DOI: 10.1016/j.virusres.2008.09.009. [LINK]


    221. 2008

  221. Hakhyun Ka, Heewon Seo, Mingoo Kim, Sunjin Moon, Heebal Kim and Chang-Kyu Lee. Gene Expression Profiling of the Uterus with Embryos Cloned by Somatic Cell Nuclear Transfer on Day 30 of Pregnancy. Animal Reproduction Science. 2008. DOI: 10.3389/fgene.2013.00035. [LINK]


  222. Kyung Mo Kim, Samsun Sung, Gustavo Caetano-Anolls, Jae Yong Han, Heebal Kim. An Approach of Orthology Detection from Homologous Sequences under Minimum Evolution. Nucleic Acids Research. 2008. DOI: 10.1093/nar/gkn485. [LINK]


  223. Seung Pyo Gong, Eun Ju Lee, Seung Tae Lee, Heebal Kim, Sang Hun Lee, Ho Jae Han and Jeong Mook Lim. Improved establishment of autologous stem cells derived from preantral follicle culture and oocyte parthenogenesis. Stem Cells and Development. 2008. DOI: 10.1089/scd.2007.0168. [LINK]


  224. Dong Hwan Lee, Hye Sook Jeong, Kyung Mo Kim, Heebal Kim, and Sang Ho Choi. A consensus sequence for binding of SmcR, a vibrio vulnificus LuxR homologue and genome-wide identification of the SmcR regulon. Journal of Biological Chemistry. 2008. DOI: 10.1074/jbc.M801480200. [LINK]


  225. Seok Jin Kang, Jin Won Choi, Sun Young Kim, Kyung Je Park, Tae Min Kim, Young Mok Lee, Heebal Kim, Jeong Mook Lim, Lae Yong Han. Reproduction of Wild Birds via Interspecies Germ Cell Transplantation. Biology of Reproduction. 2008. DOI: 10.1095/biolreprod.108.069989. [LINK]


  226. Sunjin Moon and Heebal Kim. Organization and evolution of mitochondrial gene clusters in human. Genomics. 2008. DOI: 10.7717/peerj.8603. [LINK]


  227. Xiaoping Li, Zhi-Liang Hu, Kyungtag Do, Sunjin Moon, Youkyoung Ha, Heebal Kim, Bong-Hwan Choi, Max Rothschild, Jmaes Reedcy and Kwan-Suk Kim. Development of an in silico coding gene SNP map in pigs. Animal Genetics. 2008. DOI: 10.1111/j.1365-2052.2008.01727.x. [LINK]


  228. Jee Young Lee, Jeong Mook Lim, Duk Kyung Kim, Ying Hui Zheng, Sunjin Moon, Beom Ku Han, Ki DuK Song, Heebal Kim and Jae Yong Han. Identification and Gene Expression Profiling of the Pum1 and Pum2 Members of the Pumilio Family in the Chicken. Molecular Reproduction and Development . 2008. DOI: 10.1002/mrd.20765. [LINK]


  229. Kim Tae Min, Shin Sang, Kim Sun, Kim Tae Wan, Seo Hee, Lee Seul, Kim Heebal, Lim Jeong, Han Jae. Transgene mapping and expression analysis in transgenic birds produced by lentiviral transduction of gonadal primordial germ cells. Biology of Reproduction. 2008. DOI: 10.1093/biolreprod/78.s1.225b. [LINK]


  230. Rengaraj Deiendran,  Kim Duk,  Zheng Ying,  Lee Sang,  Kim Heebal, Han Jae. Expression pattern profiling of testis specific tentative consensus sequences in chicken. Biology of Reproduction. 2008. DOI: 10.1093/biolreprod/78.s1.186b. [LINK]


  231. Deivendran Rengaraj, Duk Kyung Kim, Ying Hui Zheng, Sang In Lee, Heebal Kim, Jae Yong Han. Testis-specific novel transcripts in chicken: In situ localization and expression pattern profiling during sexual development. Biology of Reproduction. 2008. DOI: 10.1095/biolreprod.108.067959. [LINK]


  232. HyoYoung Kim, Sunjin Moon and Heebal Kim. Functional Prediction of Imprinted Genes in Chicken Based on a Mammalian Comparative Expression Network. Genomics & Informatics. 2008. DOI: 10.3390/genes11060678. [LINK]


  233. Sang Su Shin, Tae Min Kim, Sun Young Kim, Tae Wan Kim, Hee Won Seo, Seul Ki Lee, Se Chang Kwon, Gwan Sun Lee, Heebal Kim, Jeong Mook Lim, and Jae Yong Han. Generation of transgenic quail through germ cell-mediated germline transmission. FASEB journal. 2008. DOI: 10.3390/genes11060678. [LINK]


  234. Seoae Cho, Tae Sung Park, Du-Hak Yoon, Hyun Sub Cheong, Sohg Namgoong, Byung Lae Park, Hye Won Lee, Chang Soo Han, Eun Mi Kim, Il-Cheong Cheong, Heebal Kim and Hyoung Doo Shin. Identification of Genetic polymorphisms in FABP3 - 4 and Putative Association with Back Fat Thickness in Korean Native Cattle. BMB Report. 2008. DOI: 10.5483/BMBRep.2008.41.1.029. [LINK]


    235. 2007

  235. Bo R Lee, Heebal Kim, Tae S Park, Sunjin Moon, Seoae Cho, Taesung Park, Jeong M Lim and Jae Y Han. A set of stage-specific gene transcripts identified in EK stage X and HH stage 3 chick embryos. BMC Developmental Biology. 2007. DOI: 10.1186/1471-213X-7-60. [LINK]


  236. Heebal Kim, Tae Sub Park, Woon Kyu Lee, Sunjin Moon, Jin Nam Kim, Ji Hye Shin, Jin Gyoung Jung, Seon Duk Lee, Sang Hyun Park, Kyung Je Park, Mi A Kim, Sang Su Shin, Tae Min Kim, Jungrye Nam, Yeonkyung Kang, Jeong Mook Lim, Jae Yong Han. MPSS profiling of embryonic gonad and primordial germ cells in chicken. Physiological Genomics. 2007. DOI: 10.1152/physiolgenomics.00067.2006. [LINK]


  237. Han Jae, Choi Jin, Zheng Yinghui, Kim Heebal, Lee Eun, Shin Ji, Kim Jin-Kyoo. Screening of germline chimeric chickens by breed-specific DNA polymorphisms in PMEL17 gene. Biology of Reproduction. 2007. DOI: 10.1002/jez.373.. [LINK]


  238. Jin Won Choi, Eun Young Lee, Ji Hye Shin, Yinghui Zheng, Byung Wook Cho, Jin-Kyoo Kim, Heebal Kim, And Jae Yong Han. Identification of breed-Specific DNA Polymorphisms for A Simple and Unambiguous Screening System in Germline Chimeric Chickens. Journal of experimental zoology. 2007. DOI: 10.1002/jez.373. [LINK]


  239. Sunjin Moon, Hyoung Doo Shin, Hyun Sub Cheong, Hye Young Cho, Sohg Namgoong, Eun Mi Kim, Chang Su Han, Samsun Sung and Heebal Kim. BcSNPdb: Bovine coding region single nucleotide polymorphisms located proximal to quantitative trait loci. Journal of Biochemistry and Molecular Biology. 2007. DOI: 10.5483/bmbrep.2007.40.1.095.. [LINK]


  240. Heebal Kim, Samsun Sung and Robert Klein. Expansion of symmetric exon-bordering domains does not explain evolution of lineage specific genes in mammals. Genetica. 2007. DOI: 10.1007/s10709-006-9113-6. [LINK]


    241. 2006

  241. J. H. Shin, H. Kim, D. Lim, M. Jeon, B. K. Han, T. S. Park, J. K. Kim, H. S. Lillehoj, B. W. Cho and J. Y. Han. Analysis of chicken embryonic gonad ESTs. Animal Genetics. 2006. DOI: 10.1186/1471-2164-7-220. [LINK]


  242. Sidong Kim, Agapita Salces, Hongrip Min, Kwanghyun Cho and Heebal Kim. Inbreeding Levels and Pedigree Structure of Landrace, Yorkshire and Duroc Populations of Major Swine Breeding Farms in Republic of Korea. AJAS. 2006. DOI: 10.5713/ajas.2006.1217. [LINK]


  243. Jae Y Han, Tae S Park, Jin N Kim, Mi A Kim, Dajeong Lim, Jeong M Lim and Heebal Kim. Gene expression profiling of chicken primodrdial germ cell ESTs. BMC Genomics. 2006. DOI: 10.1186/1471-2164-7-220.. [LINK]


  244. Heebal Kim, Dajeong Lim, Beom Ku Han, Samsun Sung, Mina Jeon, Sunjin Moon, Yeonkyung Kang, Jungrye Nam and Jae Yong Han. ChickGCE: A novel germ cell EST database for studying the early developmental stage in chickens. Genomics. 2006. DOI: 10.1016/j.ygeno.2006.03.015. [LINK]


  245. Dajeong Lim, Hee-Seok Oh and Heebal Kim. Theoretical Peptide Mass Distribution in the Non-Redundant Protein Database of the NCBI. Genomics & Informatics. 2006. DOI: -. [LINK]


  246. Tae-Hun Kim, Nam-Soon Kim, Dajeong Lim, Kyung-Tai Lee, Jung-Hwa Oh, Hye-Sook Park, Gil-Won Jang, Hyung-Yong Kim, Mina Jeon, Bong-Hwan Choi, H. Y. Chung and Heebal Kim. Generation and Analysis of Large-Scale Expressed Sequence Tags (ESTs) from a Full-Length Enriched cDNA Library of Porcine Backfat Tissue. BMC Genomics. 2006. DOI: 10.1093/ps/82.6.952.. [LINK]


  247. Kyung-Tai Lee, Eung-Woo Park, Sunjin Moon, Hye-Sook Park, Hyung-Yong Kim, Kyung-Soo Kang, Mi-jeong Byun, Cheong-il Cheong, Sung-jong Oh, Heebal Kim, Dong-Sang Suh, Tae-Hun Kim. Genomic sequence analysis of a potential QTL region for fat trait on pig chromosome 6. Genomics. 2006. DOI: 10.1007/s11033-008-9332-2. [LINK]


    248. 2005

  248. Beom Ku Han, Jin Nam Kim, Ji Hye Shin, Jin-Kyoo Kim, Do Hyun Jo, Heebal Kim, and Jae Yong Han. Proteome Analysis of Chicken Embryonic Gonads: Identification of Major Proteins from Cultured Gonadal Primordial Germ Cells. Molecular Reproduction and Development . 2005. DOI: 10.1002/mrd.20374. [LINK]


  249. JY Han, KD Song, JH Shin, BK Han, TS Park, HJ Park, JK Kim, HS Lillehoj, and H Kim. Identification and Characterization of the Peroxiredoxin Gene Family in Chickens. Poultry Science. 2005. DOI: 10.1007/s10695-007-9135-8. [LINK]


  250. J.H.Shin, H.Kim, K.D.Song, B.K.Han, T.S.Park, D.K.Kim, J.Y.Han. A set of testis-specific novel genes collected from a collection of Korean Native Chicken ESTs. Animal Genetics. 2005. DOI: 10.1111/j.1365-2052.2005.01268.x. [LINK]


  251. Namshin Kim, Dajeong Lim, Sanghyuk Lee and Heebal Kim. ASePCR: Alternative splicing electronic RT-PCR in multiple tissues and organs. Nucleic Acids Research. 2005. DOI: 10.1093/nar/gki407. [LINK]


  252. Duk Kyung Kim, Dajeong Lim, Bo Ram Lee, Ji Hye Shin, Heebal Kim and Jae Young Han. Analysis of testis-specific transcripts in the chicken. Animal Genetics. 2005. DOI: 10.1007/s00427-006-0117-0. [LINK]


    253. 2004

  253. Heebal Kim, Robert Klein, Jacek Majewski & Jurg Ott. Estimating rates of alternative splicing in mammals and invertebrates. Nature Genetics. 2004. DOI: 10.1038/ng0904-915. [LINK]


    254. 2003

  254. Kim H., C.J. Schmidt, K.S. Decker and M.G. Emara. A double-screening method to identify reliable candidate non-synonymous SNPs from chicken EST data. Animal Genetics. 2003. DOI: 10.1046/j.1365-2052.2003.01003.x. [LINK]


  255. Emara, M.G. and H. Kim. Genetic markers and their Application in Poultry Breeding. Poultry Science. 2003. DOI: 10.1093/ps/82.6.952.. [LINK]


    256. 2002

  256. Emara, M.G., H. Kim, R.R. Lapierre, N. Lakshmanan, J. Zhu, D.L. Pollock, M. Sadjadi, and H.S. Lillehoj. Genetic diversity at the major histocompatibility complex and microsatellite loci in three commercial broiler pure lines. Poultry Science. 2002. DOI: 10.5713/ajas.14.0008. [LINK]


    257. 2001

  257. Emara, M.G., M.A., Abdellatif, D.L. Pollock, M. Sadjadi, S.S. Cloud, C.R. Pope, J.K. Rosenberger, and H. Kim. Genetic variation in susceptibility to Marek's disease in a commercial broiler population. Avian Diseases. 2001. DOI: 10.3390/genes11060678. [LINK]


    2024

    ㅇㅇㅇ
    1. None Identifying genes within pathways in unannotated genomes with PaGeSearch. Genome Research. 2024. DOI: 10.1101/gr.278566.123. [LINK]


    2. None Integrating immunoinformatics and computational epitope prediction for a vaccine candidate against respiratory syncytial virus. Infectious Disease Modelling. 2024. DOI: 10.1016/j.idm.2024.04.005. [LINK]


    3. None Discovering peptides and computational investigations of a multiepitope vaccine target Mycobacterium tuberculosis. Synthetic and Systems Biotechnology. 2024. DOI: 10.1016/j.synbio.2024.03.010. [LINK]


    4. None Immunoinformatics and computational approaches driven designing a novel vaccine candidate against Powassan virus. Scientific Reports. 2024. DOI: 10.1038/s41598-024-56554-9. [LINK]


    5. None B. longum CKD1 enhances the efficacy of anti-diabetic medicines through upregulation of IL- 22 response in type 2 diabetic mice. Gut Microbes. 2024. DOI: 10.1080/19490976.2024.2319889. [LINK]


    6. None Exploring the genetic factors behind the discrepancy in resistance to bovine tuberculosis between African zebu cattle and European taurine cattle. Scientific Reports. 2024. DOI: 10.1038/s41598-024-52606-2. [LINK]


    7. None Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy. Nature Biotechnology. 2024. DOI: 10.1038/s41587-023-02100-3. [LINK]





    • 2023

    ㅇㅇㅇ
    1. None Chromosome-level genome assembly of chub mackerel (Scomber japonicus) from the Indo-Pacific Ocean. Scientific Data. 2023. DOI: 10.1038/s41597-023-02782-z. [LINK]


    2. None Designing a Multiepitope Vaccine against Eastern Equine Encephalitis Virus: Immunoinformatics and Computational Approaches. ACS Omega. 2023. DOI: 10.1021/acsomega.3c07322. [LINK]


    3. None Inference of admixture origins in indigenous African cattle. Molecular Biology and Evolution. 2023. DOI: 10.1093/molbev/msad257. [LINK]


    4. None Supplementation with the probiotic strains Bifidobacterium longum and Lactiplantibacillus rhamnosus alleviates glucose intolerance by restoring the IL-22 response and pancreatic beta cell dysfunction in type 2 diabetic mice. Probiotics and Antimicrobial Proteins. 2023. DOI: 10.1007/s12602-023-10156-5. [LINK]


    5. None Repurposing existing drugs for monkeypox: applications of virtual screening methods. Genes & Genomics. 2023. DOI: 10.1007/s13258-023-01449-8. [LINK]


    6. None The first high-quality genome assembly and annotation of Patiria pectinifera. Scientific Data. 2023. DOI: 10.1038/s41597-023-02508-1. [LINK]


    7. None The idiosyncratic genome of Korean long-tailed chicken as a valuable genetic resource. iScience. 2023. DOI: 10.1016/j.isci.2023.106236. [LINK]


    8. None Selenobaculum gbiensis gen. nov. sp. nov., a new bacterium isolated from the gut microbiota of a patient with Crohn's disease. Scientific Reports. 2023. DOI: 10.1038/s41598-023-42017-0. [LINK]


    9. None Chromosome-level genome assembly of Korean native cattle and pangenome graph of 14 Bos taurus assemblies. Scientific Data. 2023. DOI: 10.1038/s41597-023-02453-z. [LINK]


    10. Comparison of SNP variation and extent of linkage disequilibrium in Holstein and Jersey cattle populations in Korea. Journal of Animal Breeding and Genomics. 2023. DOI: -. [LINK]


    11. None Molecular dynamics simulation of pyruvate kinase to investigate improved thermostability of artificially selected strain in Enterococcus faecium. Genes & Genomics. 2023. DOI: 10.1007/s13258-023-01373-x. [LINK]


    12. None Distinctive origin and evolution of endemic thistle of Korean volcanic island: Structural organization and phylogenetic relationships with complete chloroplast genome. PLoS ONE. 2023. DOI: https://doi.org/10.1371/journal.pone.0277471. [LINK]


    13. None Population differentiated copy number variation between Eurasian wild boar and domesticated pig populations. Scientific Reports. 2023. DOI: 10.1038/s41598-022-22373-z. [LINK]





    • 2022

    ㅇㅇㅇ
    1. None HGTree v2.0: a comprehensive database update for horizontal gene transfer (HGT) events detected by the tree-reconciliation method. Nucleic Acids Research. 2022. DOI: DOI: 10.1093/nar/gkac929. [LINK]


    2. None False gene and chromosome losses in genome assemblies caused by GC content variation and repeats. Genome Biology. 2022. DOI: 10.1186/s13059-022-02765-0. [LINK]


    3. None Little skate genome provides insights into genetic programs essential for limb-based locomotion. eLife. 2022. DOI: https://doi.org/10.7554/eLife.78345.. [LINK]


    4. None Designing a multi-epitope candidate vaccine by employing immunoinformatics approaches to control African swine fever spread. Journal of Biomolecular Structure and Dynamics. 2022. DOI: 10.1080/07391102.2022.2153922.. [LINK]


    5. None Widespread false gene gains caused by duplication errors in genome assemblies. Genome Biology. 2022. DOI: 10.1186/s13059-022-02764-1. [LINK]


    6. None Investigation of memory-enhancing effects of Streptococcus thermophilus EG007 in mice and elucidating molecular and metagenomic characteristics using Nanopore sequencing. Scientific Reports. 2022. DOI: 10.1038/s41598-022-14837-z. [LINK]


    7. None In silico SARS-CoV-2 vaccine development for Omicron strain using reverse vaccinology. Genes & Genomics. 2022. DOI: 10.1007/s13258-022-01255-8. [LINK]


    8. None Shared genetic etiology and antagonistic relationship of plasma renin activity and systolic blood pressure in a Korean cohorts. Genomics. 2022. DOI: 10.1016/j.ygeno.2022.110334. [LINK]


    9. None Microbial Identification Using rRNA Operon Region: Database and Tool for Metataxonomics with Long-Read Sequence. Microbiology spectrum. 2022. DOI: 10.1128/spectrum.02017-21. [LINK]


    10. None Immunogenic Epitope-Based Vaccine Prediction from Surface Glycoprotein of MERS-CoV by Deploying Immunoinformatics Approach. International Journal of Peptide Research and Therapeutics. 2022. DOI: 10.1007/s10989-022-10382-5. [LINK]


    11. None Positive effect on cognitive ability of Lactobacillus acidophilus EG004 in healthy mouse and fecal microbiome analysis using full-length 16S-23S rRNA metagenome sequencing. Microbiology spectrum. 2022. DOI: https://doi.org/10.1128/spectrum.01815-21. [LINK]





    • 2021

    ㅇㅇㅇ
    1. None Mitonuclear incompatibility as a hidden driver behind the genome ancestry of African admixed cattle. BMC Biology. 2021. DOI: -. [LINK]


    2. None Complete Genome Sequence of the Newly Developed Lactobacillus acidophilus Strain With Improved Thermal Adaptability. Frontiers in Microbiology. 2021. DOI: 10.3389/fmicb.2021.697351. [LINK] [VIDEO]


    3. None The transcriptomic blueprint of molt in rooster using various tissues from Ginkkoridak (Korean long-tailed chicken). BMC Genomics. 2021. DOI: 10.1186/s12864-021-07903-9. [LINK]


    4. None Phylogenetic and evolutionary analysis of foot-and-mouth disease virus A/ASIA/Sea-97 lineage. Virus Genes. 2021. DOI: 10.1007/s11262-021-01848-7. [LINK] [VIDEO]


    5. None Population differentiated copy number variation of Bos taurus, Bos Indicus and their African hybrids. BMC Genomics. 2021. DOI: 10.1186/s12864-021-07808-7. [LINK] [VIDEO]


    6. None Towards complete and error-free genome assemblies of all vertebrate species. Nature. 2021. DOI: 10.1038/s41586-021-03451-0. [LINK]


    7. None Selection and evaluation of bi-allelic autosomal SNP markers for paternity testing in Koreans. International Journal of Legal Medicine. International Journal of Legal Medicine. 2021. DOI: 10.1007/s00414-020-02495-7. [LINK] [VIDEO]


    8. None Genotyping-by-Sequencing of the regional Pacific abalone (Haliotis discus) genomes reveals population structures and patterns of gene flow. PLoS ONE. 2021. DOI: 10.1371/journal.pone.0247815. [LINK] [VIDEO]


    9. None Genetic Adaptations in Mudskipper and Tetrapod Give Insights into Their Convergent Water-to-Land Transition. Animals. 2021. DOI: 10.3390/ani11020584. [LINK] [VIDEO]





    • 2020

    ㅇㅇㅇ
    1. None Synergistic Antibacterial Effects of Probiotic Lactic Acid Bacteria with Curcuma longa Rhizome Extract as Synbiotic against Cutibacterium acnes. Applied sciences. 2020. DOI: 10.3390/app10248955. [LINK] [VIDEO]


    2. None Enhanced Symbiotic Characteristics in Bacterial Genomes with the Disruption of rRNA Operon. Biology. 2020. DOI: 10.3390/biology9120440. [LINK] [VIDEO]


    3. None Whole-Transcriptome Sequencing-Based Analysis of DAZL and Its Interacting Genes during Germ Cells Specification and Zygotic Genome Activation in Chickens. International Journal of Molecular Sciences. 2020. DOI: 10.3390/ijms21218170. [LINK]


    4. None The mosaic genome of indigenous African cattle as a unique genetic resource for African pastoralism. Nature Genetics. 2020. DOI: 10.1038/s41588-020-0694-2. [LINK] [VIDEO]


    5. None Complete genomic analysis of Enterococcus faecium heat-resistant strain developed by Two-step Adaptation Laboratory Evolution method. Frontiers in Bioengineering and Biotechnology. 2020. DOI: 10.3389/fbioe.2020.00828. [LINK] [VIDEO]


    6. None Is Lactobacillus Gram-Positive? A Case Study of Lactobacillus iners. Microorganisms. 2020. DOI: 10.3390/microorganisms8070969. [LINK] [VIDEO]


    7. None Genome-Wide Identification of Discriminative Genetic Variations in Beef and Dairy Cattle via an Information-Theoretic Approach. Genes. 2020. DOI: 10.3390/genes11060678. [LINK] [VIDEO]


    8. None Changes in cell membrane fatty acid composition of Streptococcus thermophilus in response to gradually increasing heat temperature. Journal of Microbiology and Biotechnology. 2020. DOI: 10.4014/jmb.1912.12053. [LINK] [VIDEO]


    9. None Complete Genome of Lactobacillus iners KY Using Flongle Provides Insight Into the Genetic Background of Optimal Adaption to Vaginal Econiche. Frontiers in Microbiology. 2020. DOI: 10.3389/fmicb.2020.01048. [LINK]


    10. None Genomic Prediction Accuracy Using Haplotypes Defined by Size and Hierarchical Clustering based on Linkage Disequilibrium. Frontiers in Genetics. 2020. DOI: 10.3389/fgene.2020.00134. [LINK] [VIDEO]





    • 2019

    ㅇㅇㅇ
    1. None Accurate and Strict Identification of Probiotic Species Based on Coverage of Whole-metagenome Shotgun Sequencing Data. Frontiers in Microbiology. 2019. DOI: 10.3389/fmicb.2019.01683. [LINK]


    2. None Comprehensive genome and transcriptome analyses reveal genetic relationship, selection signature, and transcriptome landscape of small-sized Korean native Jeju horse. Scientific Reports. 2019. DOI: 10.1038/s41598-020-74979-w. [LINK]


    3. None Identification of Copy Number Variation in Domestic Chicken Using Whole-Genome Sequencing Reveals Evidence of Selection in the Genome. Animals. 2019. DOI: 10.3390/ani9100809. [LINK]


    4. None Expression and Purification of Extracellular Solute-Binding Protein (ESBP) in Escherichia coli, the Extracellular Protein Derived from Bifidobacterium longum KACC 91563. Food Science of Animal Resources. 2019. DOI: 10.1093/ps/82.6.952.. [LINK]


    5. None Establishment and evaluation of prediction model for multiple disease classification based on gut microbial data. Scientific Reports. 2019. DOI: 10.1038/s41598-019-46249-x. [LINK]


    6. None Sensitivity and specificity evaluation of multiple neurodegenerative proteins for Creutzfeldt-Jakob disease diagnosis using a deep-learning approach. Prion. 2019. DOI: 10.1080/19336896.2019.1639482. [LINK]


    7. None Deep learning-based pre-mortem diagnostic methods for sporadic Creutzfeldt-Jakob disease using multiple CSF biomarkers. Prion. 2019. DOI: 10.1080/19336896.2019.1639482. [LINK]


    8. None De novo emergence and potential function of human-specific tandem repeats in brain-related loci. Human genetics. 2019. DOI: 10.1007/s00439-019-02017-5. [LINK]


    9. None Bayesian evolutionary hypernetworks for interpretable learning from high-dimensional data. Applied Soft Computing. 2019. DOI: 10.1016/j.asoc.2019.05.004. [LINK]


    10. None Whole genome sequencing reveals the impact of recent artificial selection on red sea bream reared in fish farms. Scientific Reports. 2019. DOI: 10.1038/s41598-020-58614-2. [LINK]


    11. None THERPA v2: an update of a small molecule database related to prion protein regulation and prion disease progression. Prion. 2019. DOI: 10.1080/19336896.2019.1689789. [LINK]


    12. None Comparative genomic analysis of Lactobacillus mucosae LM1 identifies potential niche-specific genes and pathways for gastrointestinal adaptation. Genomics. 2019. DOI: 10.1016/j.ygeno.2017.12.009. [LINK]


    13. None Multi-tissue observation of the long non-coding RNA effects on sexually biased gene expression in cattle. AJAS. 2019. DOI: 10.5713/ajas.18.0516. [LINK]





    • 2018

    ㅇㅇㅇ
    1. None Exploring the genomes of East African Indicine cattle breeds reveals signature of selection for tropical environmental adaptation traits. Cogent Food & Agriculture. 2018. DOI: 10.3389/fgene.2013.00035. [LINK]


    2. None Deciphering the evolutionary signatures of pinnipeds using novel genome sequences: The first genomes of Phoca largha, Callorhinus ursinus, and Eumetopias jubatus. Scientific Reports. 2018. DOI: 10.1038/s41598-018-34758-0. [LINK]


    3. None Zygotic gene activation in the chicken occurs in two waves, the first involving only maternally derived genes. eLife. 2018. DOI: 10.7554/eLife.39381. [LINK]


    4. None Microbial community and functions associated with digestion of algal polysaccharides in the visceral tract of Haliotis discus hannai: Insights from metagenome and metatranscriptome analysis. PLoS ONE. 2018. DOI: 10.1371/journal.pone.0205594. [LINK]


    5. None Rhizosphere microbiome structure alters to enable wilt resistance in tomato. Nature Biotechnology. 2018. DOI: 10.1038/nbt.4232. [LINK]


    6. None Origin and spread of Thoroughbred racehorses inferred from complete mitochondrial genome sequences: Phylogenomic and Bayesian coalescent perspectives. PLoS ONE. 2018. DOI: 10.1371/journal.pone.0203917. [LINK]


    7. None Potential Survival and Pathogenesis of a Novel Strain, Vibrio parahaemolyticus FORC_022, Isolated From a Soy Sauce Marinated Crab by Genome and Transcriptome Analyses. Frontiers in Microbiology. 2018. DOI: 10.3389/fmicb.2018.01504. [LINK]


    8. None Genome sequencing and protein domain annotations of Korean Hanwoo cattle identify Hanwoo-specific immunity-related and other novel genes. BMC Genetics. 2018. DOI: 10.1186/s12863-018-0623-x. [LINK]


    9. None THERPA: a small molecule database related to prion protein regulation and prion disease progression. Prion. 2018. DOI: 10.1080/19336896.2018.1461519. [LINK]


    10. None Time-calibrated phylogenomics of the porcine epidemic diarrhea virus: genome-wide insights into the spatio-temporal dynamics. Genes & Genomics. 2018. DOI: 10.1007/s13258-018-0686-0. [LINK]


    11. None Horizontal gene transfer of Chlamydia: Novel insights from tree reconciliation. PLoS ONE. 2018. DOI: 10.1371/journal.pone.0195139. [LINK]


    12. None Multivariate genome-wide association studies on tenderness of Berkshire and Duroc pig breeds. Genes & Genomics. 2018. DOI: 10.1007/s13258-018-0672-6. [LINK]


    13. None The first whole transcriptomic exploration of pre-oviposited early chicken embryos using single and bulked embryonic RNA-sequencing. GigaScience. 2018. DOI: 10.1093/gigascience/giy030. [LINK]


    14. None Artificial selection increased body weight but induced increase of runs of homozygosity in Hanwoo cattle. PLoS ONE. 2018. DOI: 10.1371/journal.pone.0193701. [LINK]


    15. None The transcriptome of early chicken embryos reveals signaling pathways governing rapid asymmetric cellularization and lineage segregation. Development. 2018. DOI: 10.1242/dev.157453. [LINK]


    16. None Transcriptional and translational dynamics during maternal-to-zygotic transition in early chicken development. FASEB journal. 2018. DOI: 10.1096/fj.201700955R. [LINK]


    17. None Coelacanth-specific adaptive genes give insights into primitive evolution for water-to-land transition of tetrapods. Marine Genomics. 2018. DOI: 10.1016/j.margen.2017.12.004. [LINK]


    18. None Selective pressure on the protein-coding genes of the pufferfish is correlated with phenotypic traits. Marine Genomics. 2018. DOI: 10.1016/j.margen.2017.11.015. [LINK]


    19. None Comparative genomic analysis of Lactobacillus plantarum GB-LP4 and identification of evolutionarily divergent genes in high-osmolarity environment. Genes & Genomics. 2018. DOI: 10.1007/s13258-017-0555-2. [LINK]


    20. None Deciphering signature of selection affecting beef quality traits in Angus cattle. Genes & Genomics. 2018. DOI: 10.1007/s13258-017-0610-z. [LINK]





    • 2017

    ㅇㅇㅇ
    1. None Comparative genome analysis of Lactobacillus plantarum GB-LP3 provides candidates of survival-related genetic factors. Infection, Genetics and Evolution. 2017. DOI: 10.1016/j.meegid.2017.12.025. [LINK]


    2. None Analysis of cross-population differentiation between Thoroughbred and Jeju horses. Asian-Australasian Journal of Animal Sciences. 2017. DOI: 10.5713/ajas.17.0460. [LINK]


    3. None Tracing the breeding farm of domesticated pig using feature selection (Sus scrofa). AJAS. 2017. DOI: 10.5713/ajas.17.0561. [LINK]


    4. None Tracing the spatio-temporal dynamics of endangered fin whales (Balaenoptera physalus) within baleen whale (Mysticeti) lineages: A mitogenomic perspective. Genetica. 2017. DOI: 10.1007/s10709-017-9988-4. [LINK]


    5. None Complete Genome Analysis of Lactobacillus fermentum SK152 from Kimchi Reveals Genes Associated with its Antimicrobial Activity. FEMS Microbiology Letters. 2017. DOI: 10.1093/femsle/fnx185. [LINK]


    6. None Methanobrevibacter Attenuation via Probiotic Intervention Reduces Flatulence in Adult Human: A Non-Randomised Paired-Design Clinical Trial of Efficacy. PLoS ONE. 2017. DOI: 10.1371/journal.pone.0184547. [LINK]


    7. None RNA-seq analysis of the kidneys of broiler chickens fed diets containing different concentrations of calcium. Scientific Reports. 2017. DOI: 10.1038/s41598-017-11379-7. [LINK]


    8. None Exploring evidence of positive selection signatures in cattle breeds selected for different traits. Mammalian Genome. 2017. DOI: 10.5808/gi.2008.6.1.032 . [LINK]


    9. None The Genetic Origin of Short Tail in Endangered Korean Dog, DongGyeongi. Scientific Reports. 2017. DOI: 10.1038/s41598-017-10106-6. [LINK]


    10. None Comparative genome analysis of Lactobacillus plantarum GB-LP1 isolated from traditional Korean fermented food. Journal of Molecular Microbiology and Biotechnology. 2017. DOI: 10.4014/jmb.1704.04005. [LINK]


    11. None Whole genome detection of signature of positive selection in African cattle reveals selection for thermotolerance. Animal Science Journal. 2017. DOI: 10.1111/asj.12851. [LINK]


    12. None Identification of genes related to intramuscular fat content of pigs using genome-wide association study. AJAS. 2017. DOI: 10.5713/ajas.18.0483. [LINK]


    13. None Comparative genomic analysis reveals genetic features related to the virulence of Bacillus cereus FORC_013. Gut Pathogens. 2017. DOI: 10.1186/s13099-017-0175-z. [LINK]


    14. None Cattle genome-wide analysis reveals genetic signatures in trypanotolerant N'Dama. BMC Genomics. 2017. DOI: 10.3389/fgene.2019.00442. [LINK]


    15. None Genome sequence of pacific abalone (Haliotis discus hannai): the first draft genome in family Haliotidae. GigaScience. 2017. DOI: 10.1093/gigascience/gix014. [LINK]


    16. None Complete mitochondrial genome sequences of Korean native horse from Jeju Island: Uncovering the spatio-temporal dynamics. Molecular Biology Reports . 2017. DOI: 10.1007/s11033-017-4101-8. [LINK]


    17. None Genome-association analysis of Korean Holstein milk traits using genomic estimated breeding value. Asian-Australasian Journal of Animal Sciences. 2017. DOI: 10.5713/ajas.15.0608. [LINK]


    18. None Identifying candidate positive selection genes in Korean imported pig breeds. Genes & Genomics. 2017. DOI: 10.1007/s13258-017-0534-7. [LINK]


    19. None Genomic Insights and Its Comparative Analysis with Yersinia enterocolitica Reveals the Potential Virulence Determinants and Further Pathogenicity for Foodborne Outbreaks. J. Microbiol. Biotechnol. 2017. DOI: 10.4014/jmb.1611.11048. [LINK]


    20. None The genome landscape of indigenous African cattle. Genome Biology. 2017. DOI: 10.1186/s13059-017-1153-y. [LINK]


    21. None Whole genome scan reveals the genetic signature of African Ankole cattle breed and potential for higher quality beef. BMC Genetics. 2017. DOI: 10.1186/s12863-016-0467-1. [LINK]





    • 2016

    ㅇㅇㅇ
    1. None Detecting Positive Selection of Korean Native Goat Populations Using Next-Generation Sequencing. Molecules and Cells. 2016. DOI: 10.14348/molcells.2016.0219. [LINK]


    2. None Genome Sequence of Bacillus cereus FORC_ 021, a Food- Borne Pathogen Isolated from a Knife at a Sashimi Restaurant. Journal of Microbiology and Biotechnology. 2016. DOI: 10.4014/jmb.1604.04094. [LINK]


    3. None Complete genome of Vibrio parahaemolyticus FORC014 isolated from the toothfish. Gut Pathogens. 2016. DOI: 10.1186/s13099-016-0134-0. [LINK]


    4. None Gut microbiota Modulated by Probiotics and Garcinia cambogia Extract Correlate with Weight Gain and Adipocyte Sizes in High Fat-Fed Mice. Scientific Reports. 2016. DOI: 10.1038/srep33566. [LINK]


    5. None Revealing the combined effects of lactulose and probiotic enterococci on the swine faecal microbiota using 454 pyrosequencing. Microbial Biotechnology. 2016. DOI: 10.1111/1751-7915.12370. [LINK]


    6. None Status of dosage compensation of X chromosome in bovine genome. Genetica. 2016. DOI: 10.1007/s10709-016-9912-3. [LINK]


    7. None Genomic characteristics of genetic creutzfeldt-jakob disease patients with V180I mutation and associations with other neurodegenerative disorders. PLoS ONE. 2016. DOI: 10.1371/journal.pone.0157540. [LINK]


    8. None Whole genome sequencing of Gyeongbuk Araucana, a newly developed blue-egg laying chicken breed, reveals its origin and genetic characteristics. Scientific Reports. 2016. DOI: 10.1038/srep26484. [LINK]


    9. None Complete genome sequence of Vibrio parahaemolyticus strain FORC_008, a foodborne pathogen from a flounder fish in South Korea. Pathogens and Disease. 2016. DOI: 10.1093/femspd/ftw044. [LINK]


    10. None Evolutionary constraints over microsatellite abundance in larger mammals as a potential mechanism against carcinogenic burden. Scientific Reports. 2016. DOI: 10.1038/srep25246. [LINK]


    11. None Effects of road transportation on metabolic and immunological responses in Holstein heifers. Animal Science Journal. 2016. DOI: 10.1111/asj.12604. [LINK]


    12. None RNA-seq analysis for detecting quantitative trait-associated genes. Scientific Reports. 2016. DOI: 10.1038/srep24375. [LINK]


    13. None Complete genome sequence of Vibrio parahaemolyticus FORC_023 isolated from raw fish storage water. Pathogens and Disease. 2016. DOI: 10.1093/femspd/ftw032. [LINK]


    14. None Characterizing milk production related genes in Holstein using RNA-seq. AJAS. 2016. DOI: 10.1186/s12864-017-3581-1. [LINK]


    15. None Comprehensive identification of sexually dimorphic genes in diverse cattle tissues using RNA-seq. BMC Genomics. 2016. DOI: 10.1186/s12864-016-2400-4. [LINK]


    16. None HGTree: database of horizontally transferred genes determined by tree reconciliation. Nucleic Acids Research. 2016. DOI: 10.1093/nar/gkv1245. [LINK]


    17. None The prediction of the expected current selection coefficient of single nucleotide polymorphism (SNP) associated with Ho lstein milk yield, fat and protein contents. AJAS. 2016. DOI: 10.5713/ajas.14.0337. [LINK]





    • 2015

    ㅇㅇㅇ
    1. None Complete genome sequence and SNPs of Raja pulchra (Rajiformes, Rajidae) mitochondria. Mitochondrial DNA. 2015. DOI: 10.3109/19401736.2015.1060467. [LINK]


    2. None Comparative analysis of the complete genome of Lactobacillus Plantarum GB-LP2 and potential candidate genes for host immune system enhancement. Journal of Microbiology and Biotechnology. 2015. DOI: 10.4014/jmb.1510.10081. [LINK]


    3. None Prediction of Genes Related to Positive Selectio n Using Whole-Genome Resequencing in Three Commercial Pig Breeds. Genomics & Informatics. 2015. DOI: 10.5808/GI.2015.13.4.137. [LINK]


    4. None Analysis of Stage-Specific Gene Expression Profiles in the Uterine Endometrium during Pregnancy in Pigs. PLoS ONE. 2015. DOI: 10.1371/journal.pone.0143436. [LINK]


    5. None Analysis of Global Gene Expression Profiles in the Uterine Endometrium During Pregnancy in Pigs. Biology of Reproduction. 2015. DOI: 10.1371/journal.pone.0143436. [LINK]


    6. None Complete genome sequence of Bacillus cereus FORC_005, a food-borne pathogen from the soy sauce braised fish-cake with quail-egg. Standards in Genomic Sciences. 2015. DOI: 10.1186/s40793-015-0094-x.. [LINK]


    7. None A Genome-wide Scan for Selective Sweeps in Racing Horses. Asian-Australasian Journal of Animal Sciences. 2015. DOI: 10.5713/ajas.14.0696. [LINK]


    8. None Application of LogitBoost Classifier for Traceability Using SNP Chip Data. PLoS ONE. 2015. DOI: 10.1371/journal.pone.0139685. [LINK]


    9. None Comprehensive Identification of Sexual Dimorphism-Associated Differentially Expressed Genes in Two-Way Factorial Designed RNA-Seq Data on Japanese Quail (Coturnix coturnix japonica). PLoS ONE. 2015. DOI: 10.1371/journal.pone.0139324. [LINK]


    10. None Comparative genomic analysis of mitochondrial protein-coding genes in Veneroida clams: Analysis of superfamily-specific genomic and evolutionary features. Marine Genomics. 2015. DOI: 10.1016/j.margen.2015.08.004. [LINK]


    11. None Exploring evidence of positive selection reveals genetic basis of meat quality traits in Berkshire pigs through whole genome sequencing. BMC Genetics. 2015. DOI: 10.1186/s12863-015-0265-1. [LINK]


    12. None Developmental Dynamic Analysis of the Excreted Microbiome of Chickens Using Next-Generation Sequencing. Journal of Molecular Microbiology and Biotechnology. 2015. DOI: 10.1159/000430865. [LINK]


    13. None Multiple Genes Related to Muscle Identified through a Joint Analysis of a Two-stage Genome-wide Association Study for Racing Performance of 1,156 Thoroughb reds. Asian-Australasian Journal of Animal Sciences. 2015. DOI: 10.5713/ajas.14.0008. [LINK]


    14. None Exploring the Genetic Signature of Body Size in Yucatan Miniature Pig. PLoS ONE. 2015. DOI: 10.1186/1471-2164-7-220.. [LINK]


    15. None Time-calibrated phylogenomics of the classical swine fever viruses: genome-wide Bayesian coalescent approach. PLoS ONE. 2015. DOI: 10.1371/journal.pone.0121578. [LINK]


    16. None Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project. Genome Biology. 2015. DOI: 10.1186/s13059-015-0622-4. [LINK]


    17. None Genome Wide Association Studies Using Multiple-lactation Breeding Value in Holsteins. AJAS. 2015. DOI: 10.5713/ajas.14.0337. [LINK]


    18. None A genome-wide scan for signatures of directional selection in domesticated pigs. BMC Genomics. 2015. DOI: 10.1186/s12864-015-1330-x. [LINK]


    19. None Genome-wide SNP identification and QTL mapping for black rot resistance in cabbage. BMC Plant Biology. 2015. DOI: 10.1186/s12870-015-0424-6. [LINK]


    20. None Bovine Genome-wide Association Study for Genetic Elements to Resist the Infection of Foot-and-mouth Disease in the Field. AJAS. 2015. DOI: 10.5713/ajas.14.0383. [LINK]


    21. None Genome-wide detection and characterization of positive selection in Korean Native Black Pig from Jeju Island. BMC Genetics. 2015. DOI: 10.3390/genes11060678. [LINK]


    22. None Cetaceans evolution: insights from the genome sequences of common minke whales. BMC Genomics. 2015. DOI: 10.1186/s12864-015-1213-1. [LINK]


    23. None A Novel Genetic Variant Database for Korean Native Cattle (Hanwoo): HanwooGDB. Genes & Genomics. 2015. DOI: 10.1007/s13258-014-0224-7. [LINK]





    • 2014

    ㅇㅇㅇ
    1. None Comparative genomic analysis of Staphylococcus aureus FORC_001 and S. aureus MRSA252 reveals the characteristics of antibiotic resistance and virulence factors for human infection. Journal of Microbiology and Biotechnology. 2014. DOI: 10.4014/jmb.1410.10005. [LINK]


    2. None The usage of SNP-SNP relationship matrix in the best linear unbiased prediction (BLUP) analysis using the community based cohort study. Genomics & Informatics. 2014. DOI: 10.5808/GI.2014.12.4.254. [LINK]


    3. None VCS: tool for Visualizing Copy number variation and Single nucleotide polymorphism. Asian-Australasian Journal of Animal Sciences. 2014. DOI: 10.5713/ajas.2014.14143. [LINK]


    4. None Comparative genomics reveals insights into avian genome evolution and adaptation. Science. 2014. DOI: 10.1007/s00438-019-01601-8. [LINK]


    5. None Uncovering genomic features and maternal origin of Korean Native Chicken by whole genome sequencing. PLoS ONE. 2014. DOI: 10.1371/journal.pone.0114763. [LINK]


    6. None Genomic Selection for Adjacent Genetic Markers of Yorkshire Pigs Using Regularized Regression Approaches. AJAS. 2014. DOI: 10.5713/ajas.2014.14236. [LINK]


    7. None Genome-wide DNA Methylation Profiles of Small Intestine and Liver in Fast-growing and Slow-growing Weaning Piglets. Asian-Australasian Journal of Animal Sciences. 2014. DOI: 10.5713/ajas.14.0008. [LINK]


    8. None The association of SLC6A4 5-HTTLPR and TRPV1 945G>C with functional dyspepsia in Korea. Journal of Gastroenterology and Hepatology. 2014. DOI: 10.1111/jgh.12596. [LINK]


    9. None Native Pig and Chicken Breed Database: NPCDB. AJAS. 2014. DOI: 10.5713/ajas.2014.14059. [LINK]


    10. None Estimating effective population size of thoroughbred horses using linkage disequilibrium and theta value. Livestock Science. 2014. DOI: 10.1016/j.livsci.2014.08.008. [LINK]


    11. None Thoroughbred Horse Single Nucleotide Polymorphism and Expression Database: HSDB Asian Australas. Asian-Australasian Journal of Animal Sciences. 2014. DOI: 10.5713/ajas.2013.13694.. [LINK]


    12. None Copy Number Deletion Has Little Impact on Gene Expression Levels in Racehorses. Asian-Australasian Journal of Animal Sciences. 2014. DOI: 10.5713/ajas.2013.13857. [LINK]


    13. None Comparative transcriptomic analysis to identify differentially expressed genes in fat tissue of adult Berkshire and Jeju Native Pig using RNA-seq. Molecular Biology Reports . 2014. DOI: 10.1007/s11033-014-3513-y. [LINK]


    14. None Gene expression profiling of bovine mammary gland epithelial cells stimulated with lipoteichoic acid plus peptidoglycan from Staphylococcus aureus. International Immunopharmacology. 2014. DOI: 10.1016/j.intimp.2014.05.002. [LINK]


    15. None Deciphering the genetic blueprint behind Holstein milk proteins and production. Genome Biology and Evolution . 2014. DOI: 10.1093/gbe/evu102. [LINK]


    16. None Differential Evolution between Monotocous and Polytocous Species. Asian-Australasian Journal of Animal Sciences. 2014. DOI: 10.5713/ajas.2013.13696. [LINK]


    17. None Semantic modeling for SNPs associated with ethnic disparities in HapMap samples. Genomics & Informatics. 2014. DOI: 10.5808/GI.2014.12.1.35. [LINK]


    18. None Genome-wide association study of integrated meat quality-related t raits of the Duroc pig breed. Asian-Australasian Journal of Animal Sciences. 2014. DOI: 10.3390/genes11060678. [LINK]


    19. None Deleted copy number variation of Hanwoo and Holstein using next generation sequencing at the population level. BMC Genomics. 2014. DOI: 10.1186/1471-2164-15-240. [LINK]


    20. None Investigation of de novo unique differentially expressed genes related to evolution in exercise response during domestication in Thoroughbred race horses. PLoS ONE. 2014. DOI: 10.1371/journal.pone.0091418. [LINK]


    21. None Genotype-environment interactions for quantitative traits in Korea Associated Resource (KARE) cohorts. BMC Genetics. 2014. DOI: 10.1186/1471-2156-15-18. [LINK]


    22. None Characterization of Genes for Beef Marbling Based on Applying Gene Coexpression Network. International Journal of Genomics. 2014. DOI: 10.1155/2014/708562. [LINK]





    • 2013

    ㅇㅇㅇ
    1. None Accurate Estimation of Effective Population Size in the Korean Dairy Cattle Based on Linkage Disequilibrium Corrected by Genomic Relationship Matrix. Asian-Australasian Journal of Animal Sciences. 2013. DOI: 10.5713/ajas.2013.13320. [LINK]


    2. None Genome-wide Association Study of Chicken Plumage Pigmentation. Asian-Australasian Journal of Animal Sciences. 2013. DOI: 10.5194/aab-63-231-2020. [LINK]


    3. None Complete genome sequences of porcine reproductive and respiratory syndrome viruses: perspectives on their temporal and spatial dynamics. Molecular Biology Reports . 2013. DOI: 10.1007/s11033-013-2802-1. [LINK]


    4. None Metagenome Analysis of Protein Domain Collocation within Cellulase Genes of Goat Rumen Microbes. Asian-Australasian Journal of Animal Sciences. 2013. DOI: 10.5713/ajas.2013.13219. [LINK]


    5. None De novo assembly and comparative analysis of the Enterococcus faecalis genome (KACC91532) from a Korean neonate. Journal of Microbiology and Biotechnology. 2013. DOI: 10.4014/jmb.1303.03045. [LINK]


    6. Semantic networks for genome-wide CNV associated with AST and ALT in Korean cohorts. Molecular & Cellular Toxicology. 2013. DOI: 10.1007/s13273-013-0014-3. [LINK]


    7. None Identification of differentially evolved genes: An alternative approach to detection of accelerated molecular evolution from genome-wide comparative data. Evolutionary Bioinformatics. 2013. DOI: 10.4137/EBO.S12166. [LINK]


    8. None Acceleration of X-chromosome gene order evolution in the cattle lineage. BMB Report. 2013. DOI: 10.5483/BMBRep.2013.46.6.185. [LINK]


    9. Comparative transcriptome analysis of adipose tissues reveals that ECM-receptor interaction involved in the depot-specific adipogenesis in cattle. PLoS ONE. 2013. DOI: 10.1371/journal.pone.0066267. [LINK]


    10. None The duck genome and transcriptome provide insight into an avian influenza virus reservoir species. Nature Genetics. 2013. DOI: 10.1038/ng.2657. [LINK]


    11. Peeling Back the Evolutionary Layers of Molecular Mechanisms Responsive to Exercise-Stress in the Skeletal Muscle of the Racing Horse. DNA Research. 2013. DOI: 10.1093/dnares/dst010. [LINK]


    12. Genetic diversity, population structure and relationships in indigenous cattle populations of Ethiopia and Korean Hanwoo breeds using SNP markers. Frontiers in Genetics. 2013. DOI: 10.3389/fgene.2013.00035. [LINK]


    13. None Ubiquitous Polygenicity of Human Complex Traits: Genome-Wide Analysis of 49 Traits in Koreans. PLoS Genetics. 2013. DOI: 10.1371/journal.pgen.1003355. [LINK]


    14. None Primed pluripotent cell lines derived from various embryonic origins and somatic cells in pig. PLoS ONE. 2013. DOI: 10.1371/journal.pone.0052481. [LINK]


    15. None Genetic variants and signatures of selective sweep of Hanwoo population (Korean native cattle). BMB Report. 2013. DOI: 10.3390/genes11060678. [LINK]


    16. None Gene Co-expression Analysis to Characterize Genes Related to Marbling Trait in Hanwoo (Korean) Cattle. Asian-Australasian Journal of Animal Sciences. 2013. DOI: 10.3390/genes11060678. [LINK]





    • 2012

    ㅇㅇㅇ
    1. None Reanalysis of Ohno's hypothesis on conservation of the size of the X chromosome in mammals. Animal Cells And Systems. 2012. DOI: 10.1080/19768354.2012.724709. [LINK]


    2. None An integrated approach of comparative genomics and heritability analysis of pig and human on obesity trait: evidence for candidate genes on human chromosome 2. BMC Genomics. 2012. DOI: 10.1186/1471-2164-13-711. [LINK]


    3. None Analyses of pig genomes provide insight into porcine demography and evolution. Nature. 2012. DOI: 10.1038/nature11622. [LINK]


    4. None Microarray Analysis of Gene Expression in the Uterine Endometrium during the Implantation Period in Pigs. Asian-Australasian Journal of Animal Sciences. 2012. DOI: 10.3390/ijms21030890. [LINK]


    5. None Tracing the genetic history of porcine reproductive and respiratory syndrome viruses derived from the complete ORF 5-7 sequences: a Bayesian coalescent approach. Archives of Virology. 2012. DOI: 10.1007/s00705-012-1408-6. [LINK]


    6. None Genome-wide analysis of copy number variations reveals that ageing processes influence body fat distribution in Korea Associated Resource (KARE) cohorts. Human genetics. 2012. DOI: 10.1007/s00439-012-1203-1. [LINK]


    7. None Gene expression profile of human peripheral blood mononuclear cells induced by Staphylococcus aureus lipoteichoic acid. International Immunopharmacology. 2012. DOI: 10.5713/ajas.14.0008. [LINK]


    8. None Genome scanning for conditionally essential genes in Salmonella enterica Serotype Typhimurium. Appl Environ Microbiol. 2012. DOI: 10.5713/ajas.14.0008. [LINK]


    9. None Identification of BoLA-DRB3.2 alleles in Korean Native Cattle (Hanwoo) and Holstein populations using a next generation sequencer. Animal Genetics. 2012. DOI: 10.1111/j.1365-2052.2011.02264.x. [LINK]





    • 2011

    ㅇㅇㅇ
    1. None Analysis of gene expression profiles from subcutaneous adipose tissue of two pig breeds. Genes & Genomics. 2011. DOI: 10.1021/acs.jafc.9b08191. [LINK]


    2. None A genome-wide identification of genes potentially associated with host specificity of Brucella species. The Journal of Microbiology. 2011. DOI: 10.1007/s12275-011-1084-3. [LINK]


    3. None Development of an Integrated General Model (IGM) System for Comparison of Genetic Gains from Different Bull Selection Strategies for Korean Brown Cattle (Hanwoo). Asian-Australasian Journal of Animal Sciences. 2011. DOI: 10.5713/ajas.2011.10185. [LINK]


    4. None A replication study of genome-wide CNV association for hepatic biomarkers identifies nine genes associated with the liver function. BMB Report. 2011. DOI: 10.5483/BMBRep.2011.44.9.578. [LINK]


    5. None Identification of Candidate Genes related to Bovine Marbling using Protein-Protein Interaction Networks. International Journal of Biological Sciences. 2011. DOI: 10.7150/ijbs.7.992. [LINK]


    6. None Complete genome sequence of Bifidobacterium longum subsp. longum KACC 91563. Journal of Bacteriology. 2011. DOI: 10.1128/JB.05620-11. [LINK]


    7. None Phylogenomics and molecular evolution of foot-and-mouth disease virus. Molecules and Cells. 2011. DOI: 10.1007/s10059-011-0249-6. [LINK]


    8. None Neuronal genes for subcutaneous fat thickness in human and pig are identified by local genomic sequencing and combined SNP association study. PLoS ONE. 2011. DOI: 10.1371/journal.pone.0016356. [LINK]


    9. None Molecular epidemiology of foot-and-mouth disease virus serotypes A and O with emphasis on Korean isolates: temporal and spatial dynamics. Archives of Virology. 2011. DOI: 10.1007/s00705-011-0921-3. [LINK]


    10. None Analyses of porcine public SNPs in coding-gene regions by re-sequencing and phenotypic association studies. Molecular Biology Reports . 2011. DOI: 10.1007/s11033-010-0496-1. [LINK]


    11. None Genome-wide association study of copy number variations associated with pulmonary function measures in Korea Associated Resource (KARE) cohorts. Genomics. 2011. DOI: 10.1016/j.ygeno.2010.11.001. [LINK]


    12. None Principal components analysis applied to genetic evaluation of racing performance of Thoroughbred race horses in Korea. Livestock Science. 2011. DOI: 10.1016/j.livsci.2010.07.014. [LINK]


    13. None Direct typing and molecular evolutionary analysis of field samples of foot-and-mouth disease virus collected in Vietnam between 2006 and 2007. Veterinary Microbiology. 2011. DOI: 10.1016/j.vetmic.2010.06.030.. [LINK]





    • 2010

    ㅇㅇㅇ
    1. None Prediction models for racing performance of domestic progeny of Thoroughbreds. Journal of Animal Science and Technology. 2010. DOI: 10.5187/JAST.2010.52.6.459. [LINK]


    2. None An integrated genomic resource based on Korean cattle (Hanwoo) transcripts. Asian-Australasian Journal of Animal Sciences. 2010. DOI: 10.5713/ajas.2010.90250. [LINK]


    3. None Multi-platform Next Generation Sequencing of the Domestic Turkey (Meleagris gallopavo): Genome Assembly and Analysis. PLoS Biology. 2010. DOI: 10.1371/journal.pbio.1000475. [LINK]


    4. None Analysis of copy number variation in 8,842 Korean individuals reveals 39 genes associated with hepatic biomarkers AST and ALT. BMB Report. 2010. DOI: 10.5483/BMBRep.2010.43.8.547. [LINK]


    5. None Powerful usage of phylogenetically diverse Staphylococcus aureus control strains for detecting multidrug resistance genes in transcriptomics studies. Molecules and Cells. 2010. DOI: 10.1007/s10059-010-0090-3. [LINK]


    6. None Joint Identification of Multiple Genetic Variants via Elastic-Net Variable Selection in a Genome-Wide Association Analysis. Annals Of Human Genetics. 2010. DOI: 10.1111/j.1469-1809.2010.00597.x. [LINK]


    7. None Improved Statistical Testing of Two-class Microarrays with a Robust Statistical Approach. Interdisciplinary Bio Central. 2010. DOI: 10.4051/ibc.2010.2.2.0004. [LINK]


    8. None Transcript profiling of expressed sequence tags from intramuscular fat, longissimus dorsi muscle and liver in Korean cattle (Hanwoo). BMB Report. 2010. DOI: 10.5483/BMBRep.2010.43.2.115. [LINK]





    • 2009

    ㅇㅇㅇ
    1. None Sequence and gene organization of 24 circles from the Cotesia plutellae bracovirus genome. Archives of Virology. 2009. DOI: 10.1007/s00705-009-0441-6. [LINK]


    2. None Comparative analysis of repetitive elements of imprinting genes reveals eleven candidate impriting genes in cattle. Asian-Australasian Journal of Animal Sciences. 2009. DOI: 10.5713/ajas.2009.80485. [LINK]


    3. None Identification of the Major Proteins Produced by Cultured Germline Stem Cell in Chicken. J Androl. 2009. DOI: 10.2164/jandrol.108.007401. [LINK]


    4. None Sexually dimorphic gene expression in the chick brain before gonadal differentiation. Poultry Science. 2009. DOI: 10.3382/ps.2008-00197. [LINK]


    5. None Estimation of Genetic Parameters and Annual Trends for Racing Times of Thoroughbred Racehorses. Journal of Animal Science and Technology. 2009. DOI: -. [LINK]


    6. None Change in Gene Expression of Mouse Embryonic Stem Cells Derived from Parthenogenetic Activation. Human Reproduction . 2009. DOI: 10.1093/hmg/ddp150. [LINK]


    7. None The Pig Genome Database (PiGenome): An integrated database for pig genome research. Mammalian Genome. 2009. DOI: 10.1007/s00335-008-9156-3. [LINK]


    8. None Evidence of recombination in a new isolate of foot-and mouth disease virus serotype Asia 1. Virus Research. 2009. DOI: 10.1016/j.virusres.2008.09.009. [LINK]





    • 2008

    ㅇㅇㅇ
    1. None Gene Expression Profiling of the Uterus with Embryos Cloned by Somatic Cell Nuclear Transfer on Day 30 of Pregnancy. Animal Reproduction Science. 2008. DOI: 10.3389/fgene.2013.00035. [LINK]


    2. None An Approach of Orthology Detection from Homologous Sequences under Minimum Evolution. Nucleic Acids Research. 2008. DOI: 10.1093/nar/gkn485. [LINK]


    3. None Improved establishment of autologous stem cells derived from preantral follicle culture and oocyte parthenogenesis. Stem Cells and Development. 2008. DOI: 10.1089/scd.2007.0168. [LINK]


    4. None A consensus sequence for binding of SmcR, a vibrio vulnificus LuxR homologue and genome-wide identification of the SmcR regulon. Journal of Biological Chemistry. 2008. DOI: 10.1074/jbc.M801480200. [LINK]


    5. None Reproduction of Wild Birds via Interspecies Germ Cell Transplantation. Biology of Reproduction. 2008. DOI: 10.1095/biolreprod.108.069989. [LINK]


    6. None Organization and evolution of mitochondrial gene clusters in human. Genomics. 2008. DOI: 10.7717/peerj.8603. [LINK]


    7. None Development of an in silico coding gene SNP map in pigs. Animal Genetics. 2008. DOI: 10.1111/j.1365-2052.2008.01727.x. [LINK]


    8. None Identification and Gene Expression Profiling of the Pum1 and Pum2 Members of the Pumilio Family in the Chicken. Molecular Reproduction and Development . 2008. DOI: 10.1002/mrd.20765. [LINK]


    9. None Transgene mapping and expression analysis in transgenic birds produced by lentiviral transduction of gonadal primordial germ cells. Biology of Reproduction. 2008. DOI: 10.1093/biolreprod/78.s1.225b. [LINK]


    10. None Expression pattern profiling of testis specific tentative consensus sequences in chicken. Biology of Reproduction. 2008. DOI: 10.1093/biolreprod/78.s1.186b. [LINK]


    11. None Testis-specific novel transcripts in chicken: In situ localization and expression pattern profiling during sexual development. Biology of Reproduction. 2008. DOI: 10.1095/biolreprod.108.067959. [LINK]


    12. None Functional Prediction of Imprinted Genes in Chicken Based on a Mammalian Comparative Expression Network. Genomics & Informatics. 2008. DOI: 10.3390/genes11060678. [LINK]


    13. None Generation of transgenic quail through germ cell-mediated germline transmission. FASEB journal. 2008. DOI: 10.3390/genes11060678. [LINK]


    14. None Identification of Genetic polymorphisms in FABP3 - 4 and Putative Association with Back Fat Thickness in Korean Native Cattle. BMB Report. 2008. DOI: 10.5483/BMBRep.2008.41.1.029. [LINK]





    • 2007

    ㅇㅇㅇ
    1. None A set of stage-specific gene transcripts identified in EK stage X and HH stage 3 chick embryos. BMC Developmental Biology. 2007. DOI: 10.1186/1471-213X-7-60. [LINK]


    2. None MPSS profiling of embryonic gonad and primordial germ cells in chicken. Physiological Genomics. 2007. DOI: 10.1152/physiolgenomics.00067.2006. [LINK]


    3. None Screening of germline chimeric chickens by breed-specific DNA polymorphisms in PMEL17 gene. Biology of Reproduction. 2007. DOI: 10.1002/jez.373.. [LINK]


    4. None Identification of breed-Specific DNA Polymorphisms for A Simple and Unambiguous Screening System in Germline Chimeric Chickens. Journal of experimental zoology. 2007. DOI: 10.1002/jez.373. [LINK]


    5. None BcSNPdb: Bovine coding region single nucleotide polymorphisms located proximal to quantitative trait loci. Journal of Biochemistry and Molecular Biology. 2007. DOI: 10.5483/bmbrep.2007.40.1.095.. [LINK]


    6. None Expansion of symmetric exon-bordering domains does not explain evolution of lineage specific genes in mammals. Genetica. 2007. DOI: 10.1007/s10709-006-9113-6. [LINK]





    • 2006

    ㅇㅇㅇ
    1. None Analysis of chicken embryonic gonad ESTs. Animal Genetics. 2006. DOI: 10.1186/1471-2164-7-220. [LINK]


    2. None Inbreeding Levels and Pedigree Structure of Landrace, Yorkshire and Duroc Populations of Major Swine Breeding Farms in Republic of Korea. AJAS. 2006. DOI: 10.5713/ajas.2006.1217. [LINK]


    3. None Gene expression profiling of chicken primodrdial germ cell ESTs. BMC Genomics. 2006. DOI: 10.1186/1471-2164-7-220.. [LINK]


    4. None ChickGCE: A novel germ cell EST database for studying the early developmental stage in chickens. Genomics. 2006. DOI: 10.1016/j.ygeno.2006.03.015. [LINK]


    5. None Theoretical Peptide Mass Distribution in the Non-Redundant Protein Database of the NCBI. Genomics & Informatics. 2006. DOI: -. [LINK]


    6. None Generation and Analysis of Large-Scale Expressed Sequence Tags (ESTs) from a Full-Length Enriched cDNA Library of Porcine Backfat Tissue. BMC Genomics. 2006. DOI: 10.1093/ps/82.6.952.. [LINK]


    7. None Genomic sequence analysis of a potential QTL region for fat trait on pig chromosome 6. Genomics. 2006. DOI: 10.1007/s11033-008-9332-2. [LINK]





    • 2005

    ㅇㅇㅇ
    1. None Proteome Analysis of Chicken Embryonic Gonads: Identification of Major Proteins from Cultured Gonadal Primordial Germ Cells. Molecular Reproduction and Development . 2005. DOI: 10.1002/mrd.20374. [LINK]


    2. None Identification and Characterization of the Peroxiredoxin Gene Family in Chickens. Poultry Science. 2005. DOI: 10.1007/s10695-007-9135-8. [LINK]


    3. None A set of testis-specific novel genes collected from a collection of Korean Native Chicken ESTs. Animal Genetics. 2005. DOI: 10.1111/j.1365-2052.2005.01268.x. [LINK]


    4. None ASePCR: Alternative splicing electronic RT-PCR in multiple tissues and organs. Nucleic Acids Research. 2005. DOI: 10.1093/nar/gki407. [LINK]


    5. None Analysis of testis-specific transcripts in the chicken. Animal Genetics. 2005. DOI: 10.1007/s00427-006-0117-0. [LINK]





    • 2004

    ㅇㅇㅇ
    1. None Estimating rates of alternative splicing in mammals and invertebrates. Nature Genetics. 2004. DOI: 10.1038/ng0904-915. [LINK]





    • 2003

    ㅇㅇㅇ
    1. None A double-screening method to identify reliable candidate non-synonymous SNPs from chicken EST data. Animal Genetics. 2003. DOI: 10.1046/j.1365-2052.2003.01003.x. [LINK]


    2. None Genetic markers and their Application in Poultry Breeding. Poultry Science. 2003. DOI: 10.1093/ps/82.6.952.. [LINK]





    • 2002

    ㅇㅇㅇ
    1. None Genetic diversity at the major histocompatibility complex and microsatellite loci in three commercial broiler pure lines. Poultry Science. 2002. DOI: 10.5713/ajas.14.0008. [LINK]





    • 2001

    ㅇㅇㅇ
    1. None Genetic variation in susceptibility to Marek's disease in a commercial broiler population. Avian Diseases. 2001. DOI: 10.3390/genes11060678. [LINK]