Heebal Kim's Laboratory

Publication

Selected Publication

  1. Sohyoung Won, Jaewoong Yu, and Heebal Kim. Identifying genes within pathways in unannotated genomes with PaGeSearch. Genome Research. 2024. DOI: 10.1101/gr.278566.123. [LINK]


  2. Delphine Larivière, Linelle Abueg, Nadolina Brajuka, Cristóbal Gallardo-Alba, Bjorn Grüning, Byung June Ko, Alex Ostrovsky, Marc Palmada-Flores, Brandon D. Pickett, Keon Rabbani, Agostinho Antunes, Jennifer R. Balacco, Mark J. P. Chaisson, Haoyu Cheng, Joanna Collins, Melanie Couture, Alexandra Denisova, Olivier Fedrigo, Guido Roberto Gallo, Alice Maria Giani, Grenville MacDonald Gooder, Kathleen Horan, Nivesh Jain, Cassidy Johnson, Heebal Kim, Chul Lee, Tomas Marques-Bonet, Brian O’Toole, Arang Rhie, Simona Secomandi, Marcella Sozzoni, Tatiana Tilley, Marcela Uliano-Silva, Marius van den Beek, Robert W. Williams, Robert M. Waterhouse, Adam M. Phillippy, Erich D. Jarvis, Michael C. Schatz, Anton Nekrutenko and Giulio Formenti. Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy. Nature Biotechnology. 2024. DOI: 10.1038/s41587-023-02100-3. [LINK]


  3. Young Ho Lee, Linelle Abueg, Jin-Koo Kim, Young Wook Kim, Olivier Fedrigo, Jennifer Balacco, Giulio Formenti, Kerstin Howe, Alan Tracey, Jonathan Wood, Françoise Thibaud-Nissen, Bo Hye Nam, Eun Soo No, Hye Ran Kim, Chul Lee, Erich D. Jarvis and Heebal Kim. Chromosome-level genome assembly of chub mackerel (Scomber japonicus) from the Indo-Pacific Ocean. Scientific Data. 2023. DOI: 10.1038/s41597-023-02782-z. [LINK]


  4. Kwondo Kim, Donghee Kim, Olivier Hanotte, Charles Lee, Heebal Kim, Choongwon Jeong Author Notes. Inference of admixture origins in indigenous African cattle. Molecular Biology and Evolution. 2023. DOI: 10.1093/molbev/msad257. [LINK]


  5. Jaehoon Jung, So Yun Jhang, Bongsang Kim, Bomin Koh, Chaeyoung Ban, Hyojung Seo, Taeseo Park, Won-Jae Chi, Soonok Kim, Heebal Kim & Jaewoong Yu. The first high-quality genome assembly and annotation of Patiria pectinifera. Scientific Data. 2023. DOI: 10.1038/s41597-023-02508-1. [LINK]


  6. Jisung Jang, Jaehoon Jung, Young Ho Lee, Sanghyun Lee, Myunggi Baik & Heebal Kim. Chromosome-level genome assembly of Korean native cattle and pangenome graph of 14 Bos taurus assemblies. Scientific Data. 2023. DOI: 10.1038/s41597-023-02453-z. [LINK]


  7. Juwan Kim, Chul Lee, Byung June Ko, DongAhn Yoo, Sohyoung Won, Adam Phillippy, Olivier Fedrigo, Guojie Zhang, Kerstin Howe, Jonathan Wood, Richard Durbin, Giulio Formenti, Samara Brown, Lindsey Cantin, Claudio V. Mello, Seoae Cho, Arang Rhie, Heebal Kim and Erich D. Jarvis. False gene and chromosome losses in genome assemblies caused by GC content variation and repeats. Genome Biology. 2022. DOI: 10.1186/s13059-022-02765-0. [LINK]


  8. Byung June Ko, Chul Lee, Juwan Kim, Arang Rhie, DongAhn Yoo, Kerstin Howe, Jonathan Wood, Seoae Cho, Samara Brown, Giulio Formenti, Erich D. Jarvis, Heebal Kim. Widespread false gene gains caused by duplication errors in genome assemblies. Genome Biology. 2022. DOI: 10.1186/s13059-022-02764-1. [LINK]


  9. Hyaekang Kim, Soomin Jeon, Jina Kim, Donghyeok Seol, Jinchul Jo, Seoae Cho, and Heebal Kim. Investigation of memory-enhancing effects of Streptococcus thermophilus EG007 in mice and elucidating molecular and metagenomic characteristics using Nanopore sequencing. Scientific Reports. 2022. DOI: 10.1038/s41598-022-14837-z. [LINK]


  10. Jaehoon Jung, and Heebal Kim. Shared genetic etiology and antagonistic relationship of plasma renin activity and systolic blood pressure in a Korean cohorts. Genomics. 2022. DOI: 10.1016/j.ygeno.2022.110334. [LINK]


  11. Donghyeok Seol, Jin Soo Lim, Samsun Sung, Young Ho Lee, Misun Jeong, Seoae Cho, Woori Kwak, and Heebal Kim. Microbial Identification Using rRNA Operon Region: Database and Tool for Metataxonomics with Long-Read Sequence. Microbiology spectrum. 2022. DOI: 10.1128/spectrum.02017-21. [LINK]


  12. Soomin Jeon, Hyaekang Kim, Jina Kim, Jinchul Jo, Donghyeok Seol, Youngseok Choi, Seoae Cho, and Heebal Kim. Positive effect on cognitive ability of Lactobacillus acidophilus EG004 in healthy mouse and fecal microbiome analysis using full-length 16S-23S rRNA metagenome sequencing. Microbiology spectrum. 2022. DOI: https://doi.org/10.1128/spectrum.01815-21. [LINK]


  13. Taehyung Kwon, Kwondo Kim, Kelsey Caetano-Anolles, Samsun Sung, Seoae Cho, Choongwon Jeong, Olivier Hanotte, and Heebal Kim. Mitonuclear incompatibility as a hidden driver behind the genome ancestry of African admixed cattle. BMC Biology. 2021. DOI: -. [LINK]


  14. Arang Rhie, Shane A. McCarthy, Olivier Fedrigo, Joana Damas, Giulio Formenti, Sergey Koren, Marcela Uliano-Silva, William Chow, Arkarachai Fungtammasan, Juwan Kim, Chul Lee, Byung June Ko, Mark Chaisson, Gregory L. Gedman, Lindsey J. Cantin, Francoise Thibaud-Nissen, Leanne Haggerty, Iliana Bista, Michelle Smith, Bettina Haase, Jacquelyn Mountcastle, Sylke Winkler, Sadye Paez, Jason Howard, Sonja C. Vernes, Tanya M. Lama, Frank Grutzner, Wesley C. Warren, Christopher N. Balakrishnan, Dave Burt, Julia M. George, Matthew T. Biegler, David Iorns, Andrew Digby, Daryl Eason, Bruce Robertson, Taylor Edwards, Mark Wilkinson, George Turner, Axel Meyer, Andreas F. Kautt, Paolo Franchini, H. William Detrich III, Hannes Svardal, Maximilian Wagner, Gavin J. P. Naylor, Martin Pippel, Milan Malinsky, Mark Mooney, Maria Simbirsky, Brett T. Hannigan, Trevor Pesout, Marlys Houck, Ann Misuraca, Sarah B. Kingan, Richard Hall, Zev Kronenberg, Ivan Sović, Christopher Dunn, Zemin Ning, Alex Hastie, Joyce Lee, Siddarth Selvaraj, Richard E. Green, Nicholas H. Putnam, Ivo Gut, Jay Ghurye, Erik Garrison, Ying Sims, Joanna Collins, Sarah Pelan, James Torrance, Alan Tracey, Jonathan Wood, Robel E. Dagnew, Dengfeng Guan, Sarah E. London, David F. Clayton, Claudio V. Mello, Samantha R. Friedrich, Peter V. Lovell, Ekaterina Osipova, Farooq O. Al-Ajli, Simona Secomandi, Heebal Kim, Constantina Theofanopoulou, Michael Hiller, Yang Zhou, Robert S. Harris, Kateryna D. Makova, Paul Medvedev, Jinna Hoffman, Patrick Masterson, Karen Clark, Fergal Martin, Kevin Howe, Paul Flicek, Brian P. Walenz, Woori Kwak, Hiram Clawson, Mark Diekhans, Luis Nassar, Benedict Paten, Robert H. S. Kraus, Andrew J. Crawford, M. Thomas P. Gilbert, Guojie Zhang, Byrappa Venkatesh, Robert W. Murphy, Klaus-Peter Koepfli, Beth Shapiro, Warren E. Johnson, Federica Di Palma, Tomas Marques-Bonet, Emma C. Teeling, Tandy Warnow, Jennifer Marshall Graves, Oliver A. Ryder, David Haussler, Stephen J. O’Brien, Jonas Korlach, Harris A. Lewin, Kerstin Howe, Eugene W. Myers, Richard Durbin, Adam M. Phillippy & Erich D. Jarvis. Towards complete and error-free genome assemblies of all vertebrate species. Nature. 2021. DOI: 10.1038/s41586-021-03451-0. [LINK]


  15. Kwondo Kim, Taehyung Kwon, Tadelle Dessie, DongAhn Yoo, Okeyo Ally Mwai, Jisung Jang, Samsun Sung, SaetByeol Lee, Bashir Salim, Jaehoon Jung, Heesu Jeong, Getinet Mekuriaw Tarekegn, Abdulfatai Tijjani, Dajeong Lim, Seoae Cho, Sung Jong Oh, Hak-Kyo Lee, Jaemin Kim, Choongwon Jeong, Stephen Kemp, Olivier Hanotte, and Heebal Kim. The mosaic genome of indigenous African cattle as a unique genetic resource for African pastoralism. Nature Genetics. 2020. DOI: 10.1038/s41588-020-0694-2. [LINK] [VIDEO]


  16. Sohyun Bang, DongAhn Yoo, Soo-Jin Kim, So Yun Jhang, Seoae Cho, and Heebal Kim. Establishment and evaluation of prediction model for multiple disease classification based on gut microbial data. Scientific Reports. 2019. DOI: 10.1038/s41598-019-46249-x. [LINK]


  17. Kwondo Kim, Sohyun Bang, DongAhn Yoo, Heebal Kim, Shunsuke Suzuki. De novo emergence and potential function of human-specific tandem repeats in brain-related loci. Human genetics. 2019. DOI: 10.1007/s00439-019-02017-5. [LINK]


  18. Bo-Hye Nam, DongAhn Yoo, Young-Ok Kim, Jung Youn Park, Younhee Shin, Ga-hee Shin, Chan-Il Park, Heebal Kim, and Woori Kwak. Whole genome sequencing reveals the impact of recent artificial selection on red sea bream reared in fish farms. Scientific Reports. 2019. DOI: 10.1038/s41598-020-58614-2. [LINK]


  19. Jung Youn Park, Kwondo Kim, Hawsun Sohn, Hyunwoo Kim, Yong-Rock An, Jung-Ha Kang, Eun Mi Kim, Woori Kwak, Chul Lee, DongAhn Yoo, Jaehoon Jung, Samsun Sung, Joon Yoon, Heebal Kim. Deciphering the evolutionary signatures of pinnipeds using novel genome sequences: The first genomes of Phoca largha, Callorhinus ursinus, and Eumetopias jubatus. Scientific Reports. 2018. DOI: 10.1038/s41598-018-34758-0. [LINK]


  20. Young Sun Hwang, Minseok Seo, Sang Kyung Kim, Sohyun Bang, Heebal Kim, Jae Yong Han. Zygotic gene activation in the chicken occurs in two waves, the first involving only maternally derived genes. eLife. 2018. DOI: 10.7554/eLife.39381. [LINK]


  21. Min-Jung Kwak, Hyun Gi Kong, Kihyuck Choi, Soon-Kyeong Kwon, Ju Yeon Song, Jidam Lee, Pyeong An Lee, Soo Yeon Choi, Minseok Seo, Hyoung Ju Lee, Eun Joo Jung, Hyein Park, Nazish Roy, Heebal Kim, Myeong Min Lee, Edward M Rubin, Seon-Woo Lee, Jihyun F Kim. Rhizosphere microbiome structure alters to enable wilt resistance in tomato. Nature Biotechnology. 2018. DOI: 10.1038/nbt.4232. [LINK]


  22. Young Sun Hwang, Minseok Seo, Hee Jung Choi, Sang Kyung Kim, Heebal Kim, Jae Yong Han. The first whole transcriptomic exploration of pre-oviposited early chicken embryos using single and bulked embryonic RNA-sequencing. GigaScience. 2018. DOI: 10.1093/gigascience/giy030. [LINK]


  23. Young Sun Hwang, Minseok Seo, Bo Ram Lee, Hong Jo Lee, Young Hyun Park, Sang Kyung Kim, Hyung Chul Lee, Hee Jung Choi, Joon Yoon, Heebal Kim, Jae Yong Han. The transcriptome of early chicken embryos reveals signaling pathways governing rapid asymmetric cellularization and lineage segregation. Development. 2018. DOI: 10.1242/dev.157453. [LINK]


  24. Young Sun Hwang, Minseok Seo, Sohyun Bang, Heebal Kim, Jae Yong Han. Transcriptional and translational dynamics during maternal-to-zygotic transition in early chicken development. FASEB journal. 2018. DOI: 10.1096/fj.201700955R. [LINK]


  25. DongAhn Yoo, Kwondo Kim, Hyaekang Kim, Seoae Cho, Jin Nam Kim, Dajeong Lim, Seog-Gyu Cho, Bong-Hwan Cho & Heebal Kim. The Genetic Origin of Short Tail in Endangered Korean Dog, DongGyeongi. Scientific Reports. 2017. DOI: 10.1038/s41598-017-10106-6. [LINK]


  26. Bo-Hye Nam, Woori Kwak, Young-Ok Kim, Dong-Gyun Kim, Hee Jeong Kong, Woo-Jin Kim, Jeong-Ha Kang, Jung Youn Park, Cheul Min An, Ji-Young Moon, Choul Ji Park, Jae Woong Yu, Joon Yoon, Minseok Seo, Kwondo Kim, Duk Kyung Kim, SaetByeol Lee, Samsun Sung, Chul Lee, Younhee Shin, Myunghee Jung, Byeong-Chul Kang, Shin Ga-hee, Sojeong Ka, Kelsey Caetano-Anolles, Seoae Cho, Heebal Kim. Genome sequence of pacific abalone (Haliotis discus hannai): the first draft genome in family Haliotidae. GigaScience. 2017. DOI: 10.1093/gigascience/gix014. [LINK]


  27. Jaemin Kim, Olivier Hanotte, Okeyo Ally Mwai, Tadelle Dessie, Salim Bashir, Boubacar Diallo, Morris Agaba, Kwondo Kim, Woori Kwak, Samsun Sung, Minseok Seo, Hyeonsoo Jeong, Taehyung Kwon, Mengistie Taye, Ki-Duk Song, Dajeong Lim, Seoae Cho, Hyun-Jeong Lee, Duhak Yoon, Sung Jong Oh, Stephen Kemp, Hak-Kyo Lee and Heebal Kim. The genome landscape of indigenous African cattle. Genome Biology. 2017. DOI: 10.1186/s13059-017-1153-y. [LINK]


  28. Jaeyoung Heo, Minseok Seo, Hwanhee Park, Woon Kyu Lee, Le Luo Guan, Joon Yoon, Kelsey Caetano-Anolles, Hyeonju Ahn, Se-Young Kim, Yoon-Mo Kang, Seoae Cho & Heebal Kim. Gut microbiota Modulated by Probiotics and Garcinia cambogia Extract Correlate with Weight Gain and Adipocyte Sizes in High Fat-Fed Mice. Scientific Reports. 2016. DOI: 10.1038/srep33566. [LINK]


  29. Hyeonsoo Jeong, Kwondo Kim, Kelsey Caetano-Anolles, Heebal Kim, Byung-ki Kim, Jun-Koo Yi, Jae-Jung Ha, Seoae Cho & Dong Yep Oh. Whole genome sequencing of Gyeongbuk Araucana, a newly developed blue-egg laying chicken breed, reveals its origin and genetic characteristics. Scientific Reports. 2016. DOI: 10.1038/srep26484. [LINK]


  30. Jung Youn Park, Yong-Rock An, Chul-Min An, Jung-Ha Kang, Eun Mi Kim, Heebal Kim, Seoae Cho & Jaemin Kim. Evolutionary constraints over microsatellite abundance in larger mammals as a potential mechanism against carcinogenic burden. Scientific Reports. 2016. DOI: 10.1038/srep25246. [LINK]


  31. Minseok Seo, Kwondo Kim, Joon Yoon, Jin Young Jeong, Hyun-Jeong Lee, Seoae Cho & Heebal Kim. RNA-seq analysis for detecting quantitative trait-associated genes. Scientific Reports. 2016. DOI: 10.1038/srep24375. [LINK]


  32. Minseok Seo, Kelsey Caetano-Anolles, Sandra Rodriguez-Zas, Sojeong Ka, Jin Young Jeong, Sungkwon Park, Min Ji Kim, Whan-Gook Nho, Seoae Cho, Heebal Kim, and Hyun-Jeong Lee. Comprehensive identification of sexually dimorphic genes in diverse cattle tissues using RNA-seq. BMC Genomics. 2016. DOI: 10.1186/s12864-016-2400-4. [LINK]


  33. Hyeonsoo Jeong, Samsun Sung, Taehyung Kwon, Minseok Seo, Kelsey Caetano-Anolles, Sang Ho Choi, Seoae Cho, Arshan Nasir, and Heebal Kim. HGTree: database of horizontally transferred genes determined by tree reconciliation. Nucleic Acids Research. 2016. DOI: 10.1093/nar/gkv1245. [LINK]


  34. Leif Andersson, Alan L Archibald, Cynthia D Bottema, Rudiger Brauning, Shane C Burgess, Dave W Burt, Eduardo Casas, Hans H Cheng, Laura Clarke, Christine Couldrey, Brian P Dalrymple, Christine G Elsik, Sylvain Foissac, Elisabetta Giuffra, Martien A Groenen, Ben J Hayes, LuSheng S Huang, Hassan Khatib, James W Kijas, Heebal Kim, Joan K Lunney, Fiona M McCarthy, John C McEwan, Stephen Moore, Bindu Nanduri, Cedric Notredame, Yniv Palti, Graham S Plastow, James M Reecy, Gary A Rohrer, Elena Sarropoulou, Carl J Schmidt, Jeffrey Silv erstein, Ross L Tellam, Michele Tixier-Boichard, Gwenola Tosser-Klopp, Christopher K Tuggle, Johanna Vilkki, Stephen N White, Shuhong Zhao, Huaijun Zhou and The FAANG Consortium. Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project. Genome Biology. 2015. DOI: 10.1186/s13059-015-0622-4. [LINK]


  35. Sunjin Moon, Tae-Hun Kim, Kyung-Tai Lee, Woori Kwak, Taeheon Lee, Si-Woo Lee, Myung-Jick Kim, Kyuho Cho, Namshin Kim, Won-Hyong Chung, Samsun Sung, Taesung Park, Seoae Cho, Martien AM Groenen, Rasmus Nielsen, Yuseob Kim and Heebal Kim. A genome-wide scan for signatures of directional selection in domesticated pigs. BMC Genomics. 2015. DOI: 10.1186/s12864-015-1330-x. [LINK]


  36. Jung Youn Park, Yong-Rock An, Naohisa Kanda, Chul-Min An, Hye Suck An, Jung-Ha Kang, Eun Mi Kim, Du-Hae An, Hojin Jung, Myunghee Joung, Myung Hum Park, Sook Hee Yoon, Bo-Young Lee, Taeheon Lee, Kyu-Won Kim, Won Cheoul Park, Dong Hyun Shin, Young Sub Lee, Jaemin Kim, Woori Kwak, Hyeon Jeong Kim, Young-Jun Kwon, Sunjin Moon, Yuseob Kim, David W Burt, Seoae Cho and Heebal Kim. Cetaceans evolution: insights from the genome sequences of common minke whales. BMC Genomics. 2015. DOI: 10.1186/s12864-015-1213-1. [LINK]


  37. Guojie Zhang,Cai Li, Qiye Li, Bo Li, Denis M. Larkin, Chul Lee, Jay. Comparative genomics reveals insights into avian genome evolution and adaptation. Science. 2014. DOI: 10.1007/s00438-019-01601-8. [LINK]


  38. Hyun-Jeong Lee, Jaemin Kim, Taeheon Lee, Jun Kyu Son, Ho-Baek Yoon, Kwang-Soo Baek, Jin Young Jeong, Yong-Min Cho, Kyung-Tai Lee, Byoung-Chul Yang, Kwanghyeon Cho, Tae-Hun Kim, Eung Gi Kwon, Jungrye Nam, Woori Kwak, Seoae Cho, Heebal Kim. Deciphering the genetic blueprint behind Holstein milk proteins and production. Genome Biology and Evolution . 2014. DOI: 10.1093/gbe/evu102. [LINK]


  39. Dong-Hyun Shin, Hyun-Jeong Lee, Seoae Cho, Hyeon Jeong Kim, Jae Yeon Hwang, Chang-Kyu Lee, JinYoung Jeong, Duhak Yoon, Heebal Kim. Deleted copy number variation of Hanwoo and Holstein using next generation sequencing at the population level. BMC Genomics. 2014. DOI: 10.1186/1471-2164-15-240. [LINK]


  40. Yinhua Huang, Yingrui Li, David W Burt, Hualan Chen, Yong Zhang, Wubin Qian, Heebal Kim, Shangquan Gan, Yiqiang Zhao, Jianwen Li, Kang Yi, Huapeng Feng, Pengyang Zhu, Bo Li, Qiuyue Liu, Suan Fairley, Katharine E Magor, Zhenlin Du, Xiaoxiang Hu, Laurie Goodman, Hakim Tafer, Alain Vignal, Taeheon Lee, Kyu-Won Kim, Zheya Sheng, Yang An, Steve Searle, Javier Herrero, Martien A M Groenen, ..., Frederique Pitel, Jun Wang & Ning Li. The duck genome and transcriptome provide insight into an avian influenza virus reservoir species. Nature Genetics. 2013. DOI: 10.1038/ng.2657. [LINK]


  41. Peeling Back the Evolutionary Layers of Molecular Mechanisms Responsive to Exercise-Stress in the Skeletal Muscle of the Racing Horse. DNA Research. 2013. DOI: 10.1093/dnares/dst010. [LINK]


  42. Jian Yang, Taeheon Lee, Jaemin Kim, Myeong-Chan Cho, Bok-Ghee Han, Jong-Young Lee, Hyun-Jeong Lee, Seoae Cho, Heebal Kim. Ubiquitous Polygenicity of Human Complex Traits: Genome-Wide Analysis of 49 Traits in Koreans. PLoS Genetics. 2013. DOI: 10.1371/journal.pgen.1003355. [LINK]


  43. Jaemin Kim, Taeheon Lee, Tae-Hun Kim, Kyung-Tai Lee, Heebal Kim. An integrated approach of comparative genomics and heritability analysis of pig and human on obesity trait: evidence for candidate genes on human chromosome 2. BMC Genomics. 2012. DOI: 10.1186/1471-2164-13-711. [LINK]


  44. Martien A. M. Groenen, Alan L. Archibald, Hirohide Uenishi, Christopher K. Tuggle, Yasuhiro Takeuchi, Max F. Rothschild, Claire Rogel-Gaillard, Chankyu Park, Denis Milan, Hendrik-Jan Megens, Shengting Li, Denis M. Larkin, Heebal Kim, Laurent A. F. Frantz, Mario Caccamo, Hyeonju Ahn, Bronwen L. Aken, Anna Anselmo, Christian Anthon, Loretta Auvil, Bouabid Badaoui, Craig W. Beattie, Christian Bendixen, Daniel Berman, Frank Blecha, Jonas Blomberg, Lars Bolund, Mirte Bosse, Sara Botti, Zhan Bujie, Megan Bystrom, Boris Capitanu, Denise Carvalho-Silva, Patrick Chardon, Celine Chen, Ryan Cheng, Sang-Haeng Choi, William Chow, Richard C. Clark, Christopher Clee, Richard P. M. A. Crooijmans, Harry D. Dawson, Patrice Dehais, Fioravante De Sapio, Bert Dibbits, Nizar Drou, Zhi-Qiang Du, Kellye Eversole, João Fadista, Susan Fairley, Thomas Faraut, Geoffrey J. Faulkner, Katie E. Fowler, Merete Fredholm, Eric Fritz, James G. R. Gilbert, Elisabetta Giuffra, Jan Gorodkin, Darren K. Griffin, Jennifer L. Harrow, Alexander Hayward, Kerstin Howe, Zhi-Liang Hu, Sean J. Humphray, Toby Hunt, Henrik Hornshøj, Jin-Tae Jeon, Patric Jern, Matthew Jones, Jerzy Jurka, Hiroyuki Kanamori, Ronan Kapetanovic, Jaebum Kim, Jae-Hwan Kim, Kyu-Won Kim, Tae-Hun Kim, Greger Larson, Kyooyeol Lee, Kyung-Tai Lee, Richard Leggett, Harris A. Lewin, Yingrui Li, Wansheng Liu, Jane E. Loveland, Yao Lu, Joan K. Lunney, Jian Ma, Ole Madsen, Katherine Mann, Lucy Matthews, Stuart McLaren, Takeya Morozumi, Michael P. Murtaugh, Jitendra Narayan, Dinh Truong Nguyen, Peixiang Ni, Song-Jung Oh, Suneel Onteru, Frank Panitz, Eung-Woo Park, Hong-Seog Park, Geraldine Pascal, Yogesh Paudel, Miguel Perez-Enciso, Ricardo Ramirez-Gonzalez, James M. Reecy, Sandra Rodriguez-Zas, Gary A. Rohrer, Lauretta Rund, Yongming Sang, Kyle Schachtschneider, Joshua G. Schraiber, John Schwartz, Linda Scobie, Carol Scott, Stephen Searle, Bertrand Servin, Bruce R. Southey, Goran Sperber, Peter Stadler, Jonathan V. Sweedler, Hakim Tafer, Bo Thomsen, Rashmi Wali, Jian Wang, Jun Wang, Simon White, Xun Xu, Martine Yerle, Guojie Zhang, Jianguo Zhang, Jie Zhang, Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schoo k(International Pig Genome Consortium). Analyses of pig genomes provide insight into porcine demography and evolution. Nature. 2012. DOI: 10.1038/nature11622. [LINK]


  45. Mingoo Kim, Heewon Seo, Yohan Choi, Jangsoo Shim, Heebal Kim, Chang-Kyu Lee and Hakhyun Ka. Genome-wide analysis of copy number variations reveals that ageing processes influence body fat distribution in Korea Associated Resource (KARE) cohorts. Human genetics. 2012. DOI: 10.1007/s00439-012-1203-1. [LINK]


  46. Rami A. Dalloul, Julie A. Long, Aleksey V. Zimin, Luqman Aslam, Kathryn Beal, Le Ann Blomberg , David W. Burt, Oswald Crasta, Richard P.M.A. Crooijmans , Kristal Cooper, Roger A. Coulombe, Supriyo De, Mary E. Delany, Jerry B. Dodgson, Jennifer J. Dong , Clive Evans, Paul Flicek, Liliana Florea, Otto Folkerts, Martien A.M. Groenen, Tim T. Harkins, Javier Herrero, Steve Hoffmann, Hendrik-Jan Megens, Andrew Jiang, Pieter de Jong, Pete Kaiser, Heebal Kim, Kyu-Won Kim, Sungwon Kim, David Langenberger, Mi-Kyung Lee, Taeheon Lee, Shrinivasrao Mane, Guillaume Marcais, Manja Marz, Audrey P. McElroy, Thero Modise, Mikhail Nefedov, C?dric Notredame, Ian R. Paton, William S. Payne, Geo Pertea, Dennis Prickett, Daniela Puiu, Dan Qioa, Emanuele Raineri, Magali Ruffier, Steven L. Salzberg, Michael C. Schatz, Chantel Scheuring, Carl J. Schmidt, Steven Schroeder, Stephen MJ Searle, Edward J. Smith, Jacqueline Smith, Tad S. Sonstegard, Peter F. Stadler, Hakim Tafer, Zhijian (Jake) Tu, Curtis P. Van Tassell, Albert J. Vilella, Kelly P. Williams, James A. Yorke, Liqing Zhang, Hong-Bin Zhang, Xiaojun Zhang, Yang Zhang, and Kent M. Reed. Multi-platform Next Generation Sequencing of the Domestic Turkey (Meleagris gallopavo): Genome Assembly and Analysis. PLoS Biology. 2010. DOI: 10.1371/journal.pbio.1000475. [LINK]


  47. Kyung Mo Kim, Samsun Sung, Gustavo Caetano-Anolls, Jae Yong Han, Heebal Kim. An Approach of Orthology Detection from Homologous Sequences under Minimum Evolution. Nucleic Acids Research. 2008. DOI: 10.1093/nar/gkn485. [LINK]


  48. Namshin Kim, Dajeong Lim, Sanghyuk Lee and Heebal Kim. ASePCR: Alternative splicing electronic RT-PCR in multiple tissues and organs. Nucleic Acids Research. 2005. DOI: 10.1093/nar/gki407. [LINK]


  49. Heebal Kim, Robert Klein, Jacek Majewski & Jurg Ott. Estimating rates of alternative splicing in mammals and invertebrates. Nature Genetics. 2004. DOI: 10.1038/ng0904-915. [LINK]